| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4876 |
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| Symbol | |
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| ID | 3716235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 5496043 |
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| End bp | 5499891 |
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| Gene Length | 3849 bp |
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| Protein Length | 1282 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_350604 |
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| Protein GI | 77461097 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0958088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCAACG TCACTCCGCC AGCCTCTGTG AGCAGCACCC AACCGGCGCC CGGCTCGTCC
CTGCGCGGAA CATTGAAAGG CGCGCTGGCG ACATTGGTGC TGTTGCTGCT CGCGCTGCTG
TTCTGGCAAT TGCTCGATCA ACTGCGCGAA ACCCAGAAAA ACCAGCGCCA GTACACCATC
GACTACACCG CTGACCTCGC CGCACAGGTC AGCCTGAACA TGGCGTTGAA CGCGCAGATC
GCCCTCAACC TGCTACCGAT CGTCGAACAA CCGCAGTCGG CCGACGAACA GCAGGCGCTG
CTGCGCAAAC TTCAGAAGTC GCTGCCCGAC CTGCGCAGCC TGGCCCTCCT CAGCCCCTCC
GGAAAAATCC TCAGCGACAG CGCGACTGAC AGCCAAGACG CCGATTACCT CAGCGATCTG
GTACGCCGCA GCCGTGCTCA GGCGCATTAC TTCAGCAATG ACGACGATGG CTCGGTGGTG
CATCTGCTGT TGCATCAGGC CAGCGGCAGC ACTCGCGGTT ACTGGGCACT GCGGCTGACA
CCCACCTTCT TTAAAGCACT GACCAAACAG GGCGAAACCG GGATCCGTCC TCTGTGGCTG
GTGGAGAATC GCATCAACCA TCAGATCATC AGCCGCGACG AAGCGATGCC CATCGGCAGC
ACCAGCGTCC TGACCCCGGA CGATCTGGCC AACAGCGTGC TGACCGTGCC GCTGAGCAGC
AGCGACTGGC AACTGCGTGG CCTGTTCGAC CGCCAGCATG TGCTCGAACA ACTGCTGCCG
GCGTTCATCG GCAAATGCCT GTTGGGCCTG GCGCTTTCGC TGCTGCCGTT TATCGCACTG
CTCAACATGC GCCGCCGTCA GCGTCAGGTA CATGAAGGGC GTCGGCGTTA TCAGGATATT
TTCGAAGGCA CCGGCGTGGC GTTGTGCGTG CTGGATCTTT CGGGACTCAA CCAGCTGTTC
GAAAAGGCCC AGATCCAGAC CAGCGACCAG CTCAAGGCCT GGCTCGACCA GCCCGCGCAG
CGCCTGCAAT TGCTCCAGGA ACTGCGGGTT ACCGAGGTCA ACCAGGTTGC GTTGCAACTG
CTCAACGTCA ATTCCTGCGA CCACGCCTGG CAATTGTTGA TCGACGGTCA GCCGCACAGT
CAGTGCGCCA TCGGCAATCA GGTGCTCGAC GCCGTACTCC AGCAGCAAAA GCAGCTGGAA
CTGGAAATCA AGCTCCCGGA CATCAATGGC CGCGACCAGC ATCTGTGGCT GGTGCTGCGC
CTGCCGCAGG AGCAGCACGA CTACAAGGCC GTGATCCTGA GCATCAACGA CATCACCAGC
CGCAAACTGA TCGAACTGTC GCTGCTGGAG CGCGAAGGTT TCTGGTCGGA CGTGGTGCGC
ACCGTGCCGG ATCATCTGTA CGTGCAGGAC GTGATCAGCC AGCGGATGAT CTTCAGCAAC
CACCACCTCG GCCAGACCCT CGGTTATAAC CGCACCGAAC TGCATCAGAT GGGCGAGTAT
TTCTGGGAAA TCCTTCTGCA CCCGGAAGAC GCCGACTATT ACCACCGCTC GCGGCAGATG
CAGCGTCACG CCGGTTACAG CCAGTTGTTG CAATGCCAGT TGCGCTTCCG TCATCGCGAC
GGCAAATGGC GGCGCTTCGA CATTCGTGAA CAGGCGCTGG CCCGGGACAA GCACGATCAG
GTGACGCGGA TCATCGGCGT GGCCAAGGAC ATCACCGAGC AGATCGAAGC CAGCGAATCG
TTGCGCGACA GCGAACAACG CTACCGGATG CTCGCCGAAA GCATCAGCGA CGTGATTTTC
TCCACCGACA GCCAACTGTC GTTGAACTAC GTCAGCCCGT CGGTGCAAGC GGTGCTGGGC
TATGACGCCG AGTGGATTTT CCAGAACGGC TGGCAATCGA CCATCGCCAA CCCGCAGCAA
CTGAGCGGCA TCTATCACCT GATGGATCGG GTCAGCAAAG CGCTGGGCAA ACCCGAGCAA
CTGGTGACTT TGCGAAGCCA GGTGCAGACC CAGATGTTCC TGTTCGACTG CCTGCGCGCC
GACGGTCGCA AGATCCCGAT CGAACTGCGT CTGGTGCTGG TGTGGGACGA ACATGGCGCC
TTCGAAGGCG TGCTCGGGGT CGGCCGCGAC ATCAGCCAGC AGCGCCGCGC CGAGAAAGAC
CTGCGCATGG CGGCCACGGT ATTCGAGCAC TCGACTTCGG CGATCCTGAT CACCGACCCG
GCCGGTTACA TCGTCCAGGC CAACGAGGCG TTCAGCCGGG TCAGCGGCTA CGCGGTCAGC
GAAGTGCTCG ACCAGTTGCC GAACATGCTG ACCGTCGACG AACAGCAGGA CGCGCACCTG
CGCTACGTGC TCAAGCAGTT GCATCAGCAC AGCACCTGGG AAGGCGAAGT CTGGCTCAAG
CGCCGCAATG GCGAGCATTA CCCGGCGTGG GTCGGCATCA CTGCGGTGCT CGATGACGAG
GGCGATCTGG CCAGTTACGT GTGCTTCTTC AGCGACATCA GCGAGCGCAA GGCCAGCGAG
CAGCGGATTC ACCGCCTCGC CTACTATGAC GCCCTGACCC ACCTGCCGAA CCGCACGCTG
TTCCAGGATC GTCTGCACAC CGCGTTGCAA TCGGCCGAAC GGCAGAAGTC GTGGGTGGTG
CTGATGTTCC TCGACCTCGA CCGTTTCAAA CCGATCAACG ACTCCCTCGG CCACGCCGCC
GGCGACCGCA TGCTCAAGGA CATGGCCACC CGGCTGCTGG CCTGCGTCGA CGATGACGAC
ACCGTGGCGC GGATGGGCGG CGACGAATTC ACCCTGCTGC TGCAACACCG CTCCAGCCGC
GAGATGGCGC TGAACCGGGC GATCCACGTG GCCGAACAGA TCCTTGGCAG TCTGGTGCGG
CCGTTCGTGC TGGAGGGTCG CGAATTCTTC GTCACCGCCA GCATCGGTAT CGCCCTGAGC
CCGCAGGACG GCAACGAACT CAGCCAGTTG ATGAAGAACG CCGACACCGC GATGTACCAC
GCCAAGGAGC GCGGCAAGAA CAACTTCCAG TTCTATCAGG CCGACATGAA CGCCAGTGCG
CTGGAGCGCC TGGAACTGGA AAGCGATCTG CGCCACGCCC TGGAGCAGAA CGAATTCGTG
CTGTATTACC AGCCGCAGTT CAGCGGCGAC GGCAAACGCC TGACCGGCGC AGAAGCCCTG
CTGCGCTGGC GTCATCCCCG CCGCGGACTG GTGCCGCCGG GGGACTTCAT TCCGGTGCTC
GAAGAACTCG GGCTGGTGGT GGACGTCGGC GACTGGGTCA TCAGCGAAGC CTGTCGCCAG
CTCAAAACGT GGCACCAGAG CCGCGTGCGC GTGCCGAAGG TCTCGGTGAA CATTTCCGCC
CGGCAGTTCT CCGACGGCCA GCTCGGCACG CGGATCGCCA CCATCCTCAA GGAGACCGGC
CTGCCGCCGG CGTGCCTGGA GCTGGAACTG ACCGAAAGTA TCCTGATGCG CGAAGTCAGC
GAAGCGATGC AGATCCTTGC CGGTTTGAAG AACCTCGGCC TGAGCATCGC AGTCGACGAC
TTCGGCACCG GTTACTCATC GCTGAACTAC CTCAAGCAAT TCCCGATCGA CGTGCTGAAG
ATCGACCGCA CCTTCGTCGA CGGCCTGCCG TCCGGCGAGC AGGACGCGCA GATTGCCCGG
GCGATCATCG CCATGGCCCA CAGCCTGAAT CTGGCGGTGA TTGCCGAGGG TGTGGAAACC
CATGAACAAC TGGACTTCCT GCGCGAGCAT GGCTGCGACG AGGTTCAGGG TTATCTGTTC
GGGCGGCCGA TGCCGGCGGG CCGGTTCGAG GCGCAGTTCA GCAATGATGC GCTGTTCATG
TTCGACTGA
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| Protein sequence | MSNVTPPASV SSTQPAPGSS LRGTLKGALA TLVLLLLALL FWQLLDQLRE TQKNQRQYTI
DYTADLAAQV SLNMALNAQI ALNLLPIVEQ PQSADEQQAL LRKLQKSLPD LRSLALLSPS
GKILSDSATD SQDADYLSDL VRRSRAQAHY FSNDDDGSVV HLLLHQASGS TRGYWALRLT
PTFFKALTKQ GETGIRPLWL VENRINHQII SRDEAMPIGS TSVLTPDDLA NSVLTVPLSS
SDWQLRGLFD RQHVLEQLLP AFIGKCLLGL ALSLLPFIAL LNMRRRQRQV HEGRRRYQDI
FEGTGVALCV LDLSGLNQLF EKAQIQTSDQ LKAWLDQPAQ RLQLLQELRV TEVNQVALQL
LNVNSCDHAW QLLIDGQPHS QCAIGNQVLD AVLQQQKQLE LEIKLPDING RDQHLWLVLR
LPQEQHDYKA VILSINDITS RKLIELSLLE REGFWSDVVR TVPDHLYVQD VISQRMIFSN
HHLGQTLGYN RTELHQMGEY FWEILLHPED ADYYHRSRQM QRHAGYSQLL QCQLRFRHRD
GKWRRFDIRE QALARDKHDQ VTRIIGVAKD ITEQIEASES LRDSEQRYRM LAESISDVIF
STDSQLSLNY VSPSVQAVLG YDAEWIFQNG WQSTIANPQQ LSGIYHLMDR VSKALGKPEQ
LVTLRSQVQT QMFLFDCLRA DGRKIPIELR LVLVWDEHGA FEGVLGVGRD ISQQRRAEKD
LRMAATVFEH STSAILITDP AGYIVQANEA FSRVSGYAVS EVLDQLPNML TVDEQQDAHL
RYVLKQLHQH STWEGEVWLK RRNGEHYPAW VGITAVLDDE GDLASYVCFF SDISERKASE
QRIHRLAYYD ALTHLPNRTL FQDRLHTALQ SAERQKSWVV LMFLDLDRFK PINDSLGHAA
GDRMLKDMAT RLLACVDDDD TVARMGGDEF TLLLQHRSSR EMALNRAIHV AEQILGSLVR
PFVLEGREFF VTASIGIALS PQDGNELSQL MKNADTAMYH AKERGKNNFQ FYQADMNASA
LERLELESDL RHALEQNEFV LYYQPQFSGD GKRLTGAEAL LRWRHPRRGL VPPGDFIPVL
EELGLVVDVG DWVISEACRQ LKTWHQSRVR VPKVSVNISA RQFSDGQLGT RIATILKETG
LPPACLELEL TESILMREVS EAMQILAGLK NLGLSIAVDD FGTGYSSLNY LKQFPIDVLK
IDRTFVDGLP SGEQDAQIAR AIIAMAHSLN LAVIAEGVET HEQLDFLREH GCDEVQGYLF
GRPMPAGRFE AQFSNDALFM FD
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