Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_3643 |
Symbol | |
ID | 3715070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 4119923 |
End bp | 4121125 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | |
Product | secretion protein HlyD |
Protein accession | YP_349372 |
Protein GI | 77459865 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.870857 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0330116 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACTG CCGAAAACAC ACAAGCTCAA GACAACGCCC AGGACACTGG CAATCCGCGC AAACGCAAGG TGATGCTGCT GGTGCTGGCC GTTGTGGTTG CCCTCGCCGG TGTCGGCGTC TGGGCGTATC ACGAATTCAT CGGGCGCTGG AGCGAAAGCA CCGACGACGC CTACGTCAAC GGCAACGTGG TGGAAATCAC CCCGCTGGTG ACCGGCACCG TGGTCAGCAT CGGTGCTGAC GATGGCGATC TGGTGCATGA AGGCCAGGTG CTGATCAACT TCGACCCGAA TGACGCCGAA GTCGGCCTGC AAAGTGCCAA GGCCAATCTG GCCCGCACCG TGCGTCAGGT GCGCGGCCTG TACAGCAACG TCGACGGCAT GAAGGCCCAG GTCAATGCGC AACAGGCCGA AGTGCAGAAA GCCCAGGACA ACTTCAACCG CCGGAAAAAC CTCGCGGCCG GCGGGGCGAT TTCCCAGGAA GAACTGTCCC ACGCCCGCGA TGACCTGACC TCGGCGCAGA ACGCCCTGGC CAACGCCAAA CAGCAACTGA AAACCACCAG CGCGCTGGTC GATGACACCG TGGTGTCCTC GCACCCGGAC GTGATGGCCG CCGCCGCGCA ACTGCGTCAG GCCTACCTGA CCAACGCTCG CAGCACCTTG ATTGCGCCGG TCACCGGTTA TGTCGCCAAA CGCACCGTGC AACTTGGCCA GCGTGTGCAG CCGGGCACCG CGCTGATGGC GGTGATTCCG CTGGATCAGC TGTGGATCGA CGCCAACTTC AAGGAAACCC AGCTGCGTGA CATGCGCATT GGCCAACCGG TGGAGATCGA GTCGGACATC TACGGCAGTG ACGTCAAGTT CAACGGCACC GTCGACAGCC TCGGCGCGGG CACCGGCAGC GCGTTCGCCC TGTTGCCGGC GCAGAACGCC ACCGGTAACT GGATCAAGAT CGTGCAGCGT GTGCCGGTAC GGATTCACGT CAACGCCGAA GAGCTGGCCA AACACCCGCT TCGCGTCGGC CTGTCGACCA ATGTCGAGGT CAATCTGCAC GACCAGAGCG GCCCGGTACT GGCCCAGCAA CCGCCGCAAA AGGCCTCGTT CAGCACCAAC GTCTACGATC GCCAACTGGC CGAAGCCGAC GCGATGATCA CCCAGTTGAT CCACGACAAC AGCGCGGCGG TCAGCAAGAC TGCGCAACGC TGA
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Protein sequence | MATAENTQAQ DNAQDTGNPR KRKVMLLVLA VVVALAGVGV WAYHEFIGRW SESTDDAYVN GNVVEITPLV TGTVVSIGAD DGDLVHEGQV LINFDPNDAE VGLQSAKANL ARTVRQVRGL YSNVDGMKAQ VNAQQAEVQK AQDNFNRRKN LAAGGAISQE ELSHARDDLT SAQNALANAK QQLKTTSALV DDTVVSSHPD VMAAAAQLRQ AYLTNARSTL IAPVTGYVAK RTVQLGQRVQ PGTALMAVIP LDQLWIDANF KETQLRDMRI GQPVEIESDI YGSDVKFNGT VDSLGAGTGS AFALLPAQNA TGNWIKIVQR VPVRIHVNAE ELAKHPLRVG LSTNVEVNLH DQSGPVLAQQ PPQKASFSTN VYDRQLAEAD AMITQLIHDN SAAVSKTAQR
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