| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3440 |
|---|
| Symbol | |
|---|
| ID | 3713448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 3922813 |
|---|
| End bp | 3924297 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | permease for cytosine/purines, uracil, thiamine, allantoin |
|---|
| Protein accession | YP_349169 |
|---|
| Protein GI | 77459662 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.709152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.472139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGA ACAGATCGCA AGTGACCGAG CGCGACGGCT TGTTCGAACT CGAAGCCGGC
AGCGACGTCC TCGACAGTCC CCGTTACAAC CACGACATGG CACCGACCAA GGTGCGCGAA
CGAACCTGGA ATAAGTGGCA CATCACCGCG CTGTGGGTCG GCATGTCGAT CTGCGTGCCG
ACCTACACCC TCGGCGGCGT GCTCACCGCG TATTTCGGCC TGAGCGTCGG CGAAGCCTTG
CTGGCGATTC TGTTTGCCAA CGTCATCGTC CTGATTCCTC TCACGCTCAA TGCGTTTCCC
GGCACCAAGT ACGGGATTCC GTTTCCGGTG CTGCTGCGAT CGTCGTTCGG GATTCTCGGC
TCCAACGTGC CGTGCCTGAT CCGGGCGCTG GTGGCGTGCG GCTGGTTCGG CATTCAGACC
ATGTTCGGCG GGCTGGCGAT TCACCTGTTT CTCGGGTCGG TGTTCGACGG CTGGAAATCC
CTCGGCGGGA CGGGGGAGGT GATCGGTTTC ATGGTCTTCT GGGCGCTCAA CCTGTGGGTG
GTGATCCGCG GCGCCGAGTC GATCAAATGG CTGGAAACCC TGTCGGCACC GCTGCTGGTG
GCGGTCGGCA TCGGGCTGTT GGTGTGGGCC ATGCCGAATG TGTCGATGAC TGAATTGCTG
GCGATTCCGC CGAAGCGTCC CGAAGGTGCG AGCGTGGTCA GTTACTTCGC CGCCGGGCTG
ACGGCGATGG TCGGTTTCTG GGCCACCCTG TCGCTGAACA TTCCCGACTT CAGCCGCTAT
GCCCGCAGCC AGAAGGATCA GATCCTCGGG CAGATTTTCG GTCTGCCGCT GACCATGTTC
CTGTTTGCCG CACTGGGCGT GGTGATGACC GCCGCTTCGG TGAAACTGGT GGGCGTCAGC
GTCTCCGATC CGGTGACGTT GATCGGCCAT ATCCAGAGCC CGGTGTGGGT CGCGGTGGCC
ATGGCGCTGA TCATCATCGC CACGCTGTCG ACCAACACCG CCGCCAACAT TGTTTCGCCA
ACCAACGACT TCCAGAACAT CGCGCCCAAG GTGATCAACC GTACCAAAGC GGTAATCCTC
ACCGGGTTCG TCGGGCTGGC ACTGATGGGC CATGAGCTGC TGAAGAAGCT CGGCCTGATC
GTCTCCGATG TCAGTCTGGA AACCGTGTAT TCGAACTGGC TGCTGGGCTA TTCCAGCCTG
CTCGGGCCGA TTGCCGGGAT CATGGTGGTG GACTATTTCC TGATCAAGAA ACAGCAACTG
GACCTGGCCG GCCTGTACCG CGACGACGTG TACCCGGCGT GGAACTGGTC CGGGTTCATC
GCCTTCGGCG TGCCGGTGGT GCTGACCCTG CTGTCGCTGG GCAGCAGCGC ATTCAGCTGG
TTCTACAGCT ACGGCTGGTT CACCGGCTCG GCGCTGGGCG GGTTGATCTA TTACGGGTTG
TGCGCGATGC GTGCGCAGCC GGTGGCCGTC AAATCGCCGT TGTAA
|
|---|
| Protein sequence | MQQNRSQVTE RDGLFELEAG SDVLDSPRYN HDMAPTKVRE RTWNKWHITA LWVGMSICVP
TYTLGGVLTA YFGLSVGEAL LAILFANVIV LIPLTLNAFP GTKYGIPFPV LLRSSFGILG
SNVPCLIRAL VACGWFGIQT MFGGLAIHLF LGSVFDGWKS LGGTGEVIGF MVFWALNLWV
VIRGAESIKW LETLSAPLLV AVGIGLLVWA MPNVSMTELL AIPPKRPEGA SVVSYFAAGL
TAMVGFWATL SLNIPDFSRY ARSQKDQILG QIFGLPLTMF LFAALGVVMT AASVKLVGVS
VSDPVTLIGH IQSPVWVAVA MALIIIATLS TNTAANIVSP TNDFQNIAPK VINRTKAVIL
TGFVGLALMG HELLKKLGLI VSDVSLETVY SNWLLGYSSL LGPIAGIMVV DYFLIKKQQL
DLAGLYRDDV YPAWNWSGFI AFGVPVVLTL LSLGSSAFSW FYSYGWFTGS ALGGLIYYGL
CAMRAQPVAV KSPL
|
|---|
| |