Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_3175 |
Symbol | |
ID | 3712935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 3655545 |
End bp | 3657896 |
Gene Length | 2352 bp |
Protein Length | 783 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | |
Product | type II and III secretion system protein |
Protein accession | YP_348904 |
Protein GI | 77459397 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.114854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0336738 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGGGT CAGGGTCCAA ACGCATGGCG TTGCCGATGC TGTTGATGGC ATTGAGCGCG TGCAGCAACA CCACACCACC GAATCAACCG CCGCTGCTGG TGGACAGCGA ACTCGGCCGG CCGCTGGCCA ACACCCAGCG CAGTGGCGAC GCGGTGCTCG ACCGCGAGCG TGCGCAGGCT CAGGCAAGAC CTGCGCCGAA GCAATTGCAC AACATCACCG AACGCGCCCG CAGTGGCGGT TCGGCGCGGG GCACGACGTT GCCGGCCAAT CCGTTGGGCG ATCAACCGGT GACGCTGAAT TTTGTCGACG CCGATATCCA AGCGGTGGTG CGGGCGTTGT CGCGCTCGAC CGGTCAGCAG TTTCTGGTCG ATCCACGGGT CAAGGGCAAC CTGACGCTGG TCTCCGAAGG TCAGGTGCCG GCGCATCAGG CCTACGACAT GTTGCTGGCG GCGCTGCGCA TGCAGGGTTT CAGCGTGGTC GATGTCGGCG GCGTGGCGCA GGTGGTGCCG GAGGCCGACG CCAAATTGCT CGGCGGGCCG ATCTACAGCG CCGACAAACC GGCCGGCAAC GGCATGCTCA CCCGCACGTT CCGCCTGCAA TACGAGAACG CCGTGAACCT GATCCCGGTG CTGCGCCCGA TCGTGTCGCC GAACAATCCG ATCAACGCTT ATCCCGGCAA CAACACCATC GTCGTCACCG ACTATGCCGA GAACCTGACG CGGGTCGCAC AACTGATTCA GGGCATCGAC ACGCCGAGCG CCATCGACAC TGACGTGGTG CAGATCCAGA ACGGCATCGC CGCCGACATC GCGCCAATGG TCGCCGACCT GCTCGACGCA CCGGGCAATG ACCCGACGCA GAAAATCGCA GTGATCGGCG ACCCGCGCTC CAACACCATC ATCATCCGCG CCGGCAGCCC CGAGCGCACG GAACTGGCGC GCAACCTGAT CTACAAACTC GACAACGCGC AGAGCAATCC GAGCAATCTG CACGTGGTGT ATCTGCGCAA CGCCCAGGCC GGCAAACTGG CCCAGGCCCT GCGCGGGTTG TTGACCGGCG AGAGCGACAG CGGCACCAGC GACAATGCGC GCTCGGTGCT CAGCAACATG GGCAGTTCCA CCAACTCGGG CGGTGGGCAA AACGGCCAGA GCGGTGCGCA AAGCAACGGC AGCACCTCGA CCACCAACAA CGGCAGCACC GGCGGCAGTT ACGCCCAGGG CAGCAGCGCC AGCAGCGGTG GCAGCAATGC GCAAAGCAGC GAACAGAACG TGGCCTTCAG CGCTGGCGGC GTGACCATTC AGGCGGATGC CACCACCAAC ACCTTGCTGA TTTCCGCGCC GGAACCGCTG TATCGCAACC TGCGCGAAGT GATTGACCTG CTCGATCAGC GCCGCGCACA AGTGGTGATC GAAAGCCTGA TCGTCGAAGT TGGCGAGGAC GATGCCAGCG AATTCGGCGT GCAATGGCAG ACCGGCAATC TCGGCGGTAA AGGCGTGATC GGCGGCGCCA ACCTCGGTGG TTCGGGGATC AACGTCAACG GCAAGACCAG CCTCGATGTA CTGCCGCAAG GTTTGAACCT CGGCTACGTC AACGGCACCG TCGACATCCC CGGCATCGGC AAGATCCTCG ACCTTAAAGT GCTGGCCCGG GCGCTGAAGA GCAAGGGCGG CACCAACGTG CTGTCGACGC CGAACCTGCT GACCCTGGAC AACGAAGCCG CGAGTATTTT CGTCGGCCAG ACCATCCCGT TTGTCAGCGG CAGTTACGTC ACCGGCGGCG GGGGCACCAG CAACAACCCG TTCCAGACCG TGACCCGTGA AGAGGTCGGT TTGAAGCTCA ACGTGCGGCC GCAGATTTCC GAGGGCGGCA CGGTGAAGCT CGACATCTAT CAGGAAGTCA GCAGCATCGA CGAACGCGCC TCGGCGGCGG CCAATTCGGC GGGGATCGTC ACCAGCAAAC GCGCGCTCGA CACCAGCATC CTGTTGGATG ACGGGCAGAT CATGGTGCTC GGCGGTCTGC TGCAGGATGG CTACAGCCAG AGCAATGACG CGGTGCCGTG GCTCTCGAAC ATTCCGGGGA TTGGCGCACT GTTTCGCAAC GAACGCCGCT CGATCACCAA GACCAATCTG ATGGTGTTCC TGCGCCCGTA CATCATCCGC GACAGCGCGG CGGGCCGGAG TATTACGCTG AACCGCTACG ACTTCATGCG CCGCGCTCAG GGCGGTCTGC AACCGGAGCG CAGCTGGGCG ATGCCGGACA TGCAGGCGCC GCAATTGCCG GCCACTGCCC AAGGCGTGCC GGCACCGGTG TCCGGCCCGC GTGCGACCAT CAAAGCGGTG CCGCTGCAAT GA
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Protein sequence | MKGSGSKRMA LPMLLMALSA CSNTTPPNQP PLLVDSELGR PLANTQRSGD AVLDRERAQA QARPAPKQLH NITERARSGG SARGTTLPAN PLGDQPVTLN FVDADIQAVV RALSRSTGQQ FLVDPRVKGN LTLVSEGQVP AHQAYDMLLA ALRMQGFSVV DVGGVAQVVP EADAKLLGGP IYSADKPAGN GMLTRTFRLQ YENAVNLIPV LRPIVSPNNP INAYPGNNTI VVTDYAENLT RVAQLIQGID TPSAIDTDVV QIQNGIAADI APMVADLLDA PGNDPTQKIA VIGDPRSNTI IIRAGSPERT ELARNLIYKL DNAQSNPSNL HVVYLRNAQA GKLAQALRGL LTGESDSGTS DNARSVLSNM GSSTNSGGGQ NGQSGAQSNG STSTTNNGST GGSYAQGSSA SSGGSNAQSS EQNVAFSAGG VTIQADATTN TLLISAPEPL YRNLREVIDL LDQRRAQVVI ESLIVEVGED DASEFGVQWQ TGNLGGKGVI GGANLGGSGI NVNGKTSLDV LPQGLNLGYV NGTVDIPGIG KILDLKVLAR ALKSKGGTNV LSTPNLLTLD NEAASIFVGQ TIPFVSGSYV TGGGGTSNNP FQTVTREEVG LKLNVRPQIS EGGTVKLDIY QEVSSIDERA SAAANSAGIV TSKRALDTSI LLDDGQIMVL GGLLQDGYSQ SNDAVPWLSN IPGIGALFRN ERRSITKTNL MVFLRPYIIR DSAAGRSITL NRYDFMRRAQ GGLQPERSWA MPDMQAPQLP ATAQGVPAPV SGPRATIKAV PLQ
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