| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2680 |
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| Symbol | |
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| ID | 3714355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 3080460 |
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| End bp | 3082247 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_348411 |
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| Protein GI | 77458905 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000301439 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGATGG CGAAGGCCCC AGCCACCGCT CCCTTATTCA AGGCATTAGG TGACTATAAA
AGCATTCTGA TCAGCGTCGG ATGCTTTACC GCACTGATTA ACGTGCTGAT GCTGGTGCCC
TCCATATATA TGCTTCAGGT CTACGACCGG GTGCTGTCTT CGCAAAACGA AACCACCCTG
GCGATGCTGT CGCTGATGGT CGTCGGTTTC TTCGCCTTCA TTGGTCTGCT GGAGGTGGTG
CGCAGCTTTA TCGTGATCCG CATCGGCAGC CAGCTCGAGC GCCGTTTCAA TCTGCGGGTC
TATCAGGCGG CGTTCGAGCG CAACCTGTTC AAGGGCGAGG GTAACGCCGG GCAGTCCCTG
GGTGACCTGA CCCACATTCG CCAATTCGTC ACCGGGCCTG CGCTGTTCGC ATTCTTCGAT
GCACCGTGGT TTCCGGTTTA TCTGTTCGTG ATTTACCTGT TCAACGTCTG GCTCGGCGTG
CTGGCCACGG CGGGAGCGCT GCTGCTGATC GCGCTGGCAT GCCTGAACGA ATACATGACC
AAGAAGCCAC TGGGCGAAGC CGCCGGCTTC TCGCAGAAAT CCAGCCAATT GGCCACCAGC
CACCTGCACA ACGCCGAAAC CATTCAAGCC ATGGGCATGC TCGGCGCCTT GCGCAAGCGT
TGGTTCCAGG TGCATTCGCG CTTTCTCGGC CTGCAAAATC AGGCCAGCGA CACCGGCGCG
GTGATCAGCT CGCTGAGCAA GACCCTGCGT CTATGCCTGC AATCGTTGGT GTTGGGCCTC
GGCGCACTGC TGGTGATCAA GGGCGACATG ACCGCCGGGA TGATGATCGC CGGCTCCATC
CTGATGGGCC GGGTGCTGAG CCCGATCGAT CAGTTGATTG CCGTGTGGAA GCAGTGGAGC
GGGGCGAAGC TGGCTTACCG TCGCCTCGAT GCGTTGCTGC AAGCCTTCCC GCCGAGCGAT
GACGCCATGG CGCTGCCGGC GCCGAAAGGC CAGATCACCT TCGAACAAGT CAGCGCCGGC
CCTCCGGGTC AGCGTGCCGC GACCTTGCAT ATGGTCAACT TCAACCTGGC GGCCGGTGAA
GTGCTGGGCG TGCTGGGAGC CTCCGGCTCC GGCAAATCGA CCCTGGCACG TGTGTTGGTC
GGCGTATGGC CGGCCCTTGG CGGCACGGTG CGTCTGGACG GCGCCGACAT CCACCGTTGG
AACCGCGATC AGCTCGGCCC GTACATCGGC TACCTGCCGC AGGACATCGA ACTGTTCAGC
GGCAGCATCG CCGAGAACAT CGCCCGCTTC AGTGAAGCCG ATCCGCAAAA GGTCGTGGCT
GCCGCGCAAC AGGCCGGCGT GCACGAACTG ATCCTGCGCA TGCCGCAAGG CTACGACACG
CAATTGGGCG AGGACGGCAG CGGTTTGTCC GGCGGCCAGA AACAGCGCGT GGCACTGGCC
CGTGCGTTGT ACGGCAACCC GAGCCTGGTG GTGCTCGACG AGCCGAACTC CAACCTCGAC
ACCGTCGGCG AAGCCGCGCT GTCCAGCGCG ATCGTGCAGC TCAAGGCCCA AGGCACGACT
GTAGTGCTGG TGACCCACCG TTCTTCGGTG CTGGCCCAGG CCGACAAGCT GCTGGTGCTC
AACGACGGTC GCCTGCAAGC CTTCGGCCCG AGCCACGATG TGCTCAAGGC ACTGTCCGGC
AATCAGCCCG GCAACCAGCC ACAACAAAAT GAAAAACCTG CGCAAGCACC GGCCGGGCTC
AGCATGAGCC GCCAGTATCA GCCGACGACA AGGAATTCGG GTGTATGA
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| Protein sequence | MKMAKAPATA PLFKALGDYK SILISVGCFT ALINVLMLVP SIYMLQVYDR VLSSQNETTL
AMLSLMVVGF FAFIGLLEVV RSFIVIRIGS QLERRFNLRV YQAAFERNLF KGEGNAGQSL
GDLTHIRQFV TGPALFAFFD APWFPVYLFV IYLFNVWLGV LATAGALLLI ALACLNEYMT
KKPLGEAAGF SQKSSQLATS HLHNAETIQA MGMLGALRKR WFQVHSRFLG LQNQASDTGA
VISSLSKTLR LCLQSLVLGL GALLVIKGDM TAGMMIAGSI LMGRVLSPID QLIAVWKQWS
GAKLAYRRLD ALLQAFPPSD DAMALPAPKG QITFEQVSAG PPGQRAATLH MVNFNLAAGE
VLGVLGASGS GKSTLARVLV GVWPALGGTV RLDGADIHRW NRDQLGPYIG YLPQDIELFS
GSIAENIARF SEADPQKVVA AAQQAGVHEL ILRMPQGYDT QLGEDGSGLS GGQKQRVALA
RALYGNPSLV VLDEPNSNLD TVGEAALSSA IVQLKAQGTT VVLVTHRSSV LAQADKLLVL
NDGRLQAFGP SHDVLKALSG NQPGNQPQQN EKPAQAPAGL SMSRQYQPTT RNSGV
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