| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_2097 |
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| Symbol | ligD |
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| ID | 3715990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 2382341 |
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| End bp | 2384887 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_347829 |
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| Protein GI | 77458324 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.64367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.288543 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGGA ATCTCGACGA CTACAACCGG ATGCGCGACT TTTCAGCGAC CTCTGAACCG
GCGGCTGGCC ACCGCCGGGG CAAGAAACCC GCCGGCGACC ACGCCCTGCA GTTCTGCATA
CAAAAGCACG ATGCCTCGCA TCTGCATTAC GACTTTCGCC TCGAGCTCGA CGGCGCGCTC
AAGAGCTGGG CGGTGCCCAA GGGGCCGTCG CTGGATCCCA AGGTCAAGCG GCTGGCGGTG
CACGTTGAGG ATCATCCGCT GGACTACGCG ACGTTCGAGG GCAGCATTCC CGAGGGGCAT
TACGGCGCCG GCGATGTGAT CGTCTGGGAT CGTGGCGTGT GGATTCCGTT GGAAGACCCG
GAGAAAGCCT ACGCCAAGGG CAAGCTCAAA TTCGAACTGC AAGGCGAGAA GCTCGCCGGG
GTGTGGAACC TGGTGCGCAC CCACATGCCG GGCAAGAAAG AGCAGTGGTT TCTGATCAAG
CATCAGGACG GCGCCGCACG CCCGCAAAGC GATTACGACG TGCTGGTCGC CGAGCCCGAC
AGTGTGCTCA GCGAGCGCAC GATCGTCGAC AAACCCCGGC TTAGTGCGAA GCAGGTCAAA
CCCCTTCAAG GCCCGGCGAA AGCACCCCGC AAGTCGGCCT CGGGCAAGCT CACCGGGGCG
CACAAGGCCA AAATTCCCGC GCAGCTCAAA CCTCAACTCG CCACCTTGGT GGAGAGCGCG
CCGGAGGGCG ATTGGCAATA CGAAATCAAG TTCGACGGTT ATCGGATCAT GGCGCGCATT
GATCAGGACG AGGTGCAGTT GTTCACCCGC AATGGCCATG ACTGGACGCA CAAGTTGCCA
AAGCAGGCGC AAGCCCTGGC GGCGCTGGGC CTGGAGTCGG CGTGGCTGGA TGGTGAGATG
GTCGTCGCCG ATGCGGACGG CGTGCCTGAT TTTCAGGCCC TGCAAAACGC GTTCGATTCG
GGACGCAGCG AAAACATCGT CTATTACCTG TTTGATCTGC CGTATCTGAA CGGTGTCGAC
CTGCGCGAGG TGGCGGTGGA GGAACGGCGC GCAGCGCTGG CCACCGTTCT GAAAACCCAT
CAAGACCCGC TGCTGCGTTT CTCCGAAGCG TTCGACGAAA CCCCGCAGGC GTTGCTCAAC
AGCGCCTGTC AGATGCGCAT GGAAGGCCTG ATCGGCAAAC GCCTCGGCTC GCCTTACGTG
TCGCGCCGCA GCAGCGACTG GATCAAGCTC AAGTGCAAGC ATCGCCAGGA ATTCGTGATC
GTCGGCTACA CCGATCCGAA AGGCGCGCGC AGTTCGTTCG GCGCACTGTT GCTGGGTCTG
CATGATCGTG ACAGCGGCGA GTTGCGGTAC GCCGGCAAGG TCGGCACGGG ATTCAATGAA
ACCACCCTCA AGAGCATCCT CGCGCAGCTC AAACCGTTGC GAGTGAAAAA ACCGGCAGTG
GCCAACCCGC CCACAGGGTT CGAGGCCAAG GGTGTGCACT GGCTCAAACC GAGTCTGCTG
GCGGAAGTGG CGTTCGCCGA AATGACCCAG GATGGCTCGG TGCGCCATGC CGTGTTCCAT
GGCTTGCGCG AGGACAAACC GGCCAAGGAC ATCACCGAGG AGCGCGCCAA ACCCATGAAC
ACTTCAAAGA CTGAATCTAC CGCCCCGTCC CAATCCGGGC TGGCCGACGG CAAGGTGCGG
ATCACTCATC CCGACCGGGT GATCGATGCC AGCAGTGGCA CCACCAAAAT GCAGCTGGCC
GAGTATTACG CCAGCGTCGC CGAATGGATT CTGCCGCAGC TCAAGGATCG CCCGGTGGCG
CTGGTGCGCG CGCCGGACGG CATTGCCGGT GATCTGTTTT TCCAGAAGAA CGCCGAACAC
CTGGCGATCC CCGGCATCCG CACACTCGAC AAGGAGCTGA CCGGCCAGCC GGTGATGCTG
ATCAACAATG CCGAAGCCTT GATCGGCGCG GTGCAGATGA GCACGGTCGA ACTGCACACC
TGGAACGCCA CCACGACGGA TCTGGACAAG CCCGACCGCT TTGTCCTCGA CCTCGACCCG
GACCCGGCGC TGCCCTGGAA AAGCATGATC GAAGCCACGG CACTCACCCT GACCGTGCTG
GATGAACTGG GCCTCAAGGC GTTTCTCAAG ACCAGCGGTG GCAAGGGCAT TCATCTGGTG
GTGCCGCTGA CCCGCAAGCA TGGCTGGGAC GAGGTCAAGG ATTTCAGCCA CGCCATCGTC
ACGCACATGG CGAAATTGTT GCCGGAGCGT TTTTCTGCGG TGTCCGGGCC GAAAAACCGT
GTGGGGCGGA TCTTCATCGA TTACCTGCGC AACGGGCTGG GCGCCACCAC CATTTGCGCC
TACGCAGCGC GTACCCGCGA AGGATTACCG GTGTCGGTGC CGCTGTTTCG GGAAGAAGTC
GGCGAGATCA AAGGCGCCGA TCAATGGAAC GTACACAACG TTCACGAACG GCTCGCGGAA
GTAGGCGATG AACCTTGGGC GGACATCAAG AAAACCCGGC AAAGCATCAC GGCCGAGATG
CGCAAGCGGG TGGGCATGAA GAAATGA
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| Protein sequence | MSRNLDDYNR MRDFSATSEP AAGHRRGKKP AGDHALQFCI QKHDASHLHY DFRLELDGAL
KSWAVPKGPS LDPKVKRLAV HVEDHPLDYA TFEGSIPEGH YGAGDVIVWD RGVWIPLEDP
EKAYAKGKLK FELQGEKLAG VWNLVRTHMP GKKEQWFLIK HQDGAARPQS DYDVLVAEPD
SVLSERTIVD KPRLSAKQVK PLQGPAKAPR KSASGKLTGA HKAKIPAQLK PQLATLVESA
PEGDWQYEIK FDGYRIMARI DQDEVQLFTR NGHDWTHKLP KQAQALAALG LESAWLDGEM
VVADADGVPD FQALQNAFDS GRSENIVYYL FDLPYLNGVD LREVAVEERR AALATVLKTH
QDPLLRFSEA FDETPQALLN SACQMRMEGL IGKRLGSPYV SRRSSDWIKL KCKHRQEFVI
VGYTDPKGAR SSFGALLLGL HDRDSGELRY AGKVGTGFNE TTLKSILAQL KPLRVKKPAV
ANPPTGFEAK GVHWLKPSLL AEVAFAEMTQ DGSVRHAVFH GLREDKPAKD ITEERAKPMN
TSKTESTAPS QSGLADGKVR ITHPDRVIDA SSGTTKMQLA EYYASVAEWI LPQLKDRPVA
LVRAPDGIAG DLFFQKNAEH LAIPGIRTLD KELTGQPVML INNAEALIGA VQMSTVELHT
WNATTTDLDK PDRFVLDLDP DPALPWKSMI EATALTLTVL DELGLKAFLK TSGGKGIHLV
VPLTRKHGWD EVKDFSHAIV THMAKLLPER FSAVSGPKNR VGRIFIDYLR NGLGATTICA
YAARTREGLP VSVPLFREEV GEIKGADQWN VHNVHERLAE VGDEPWADIK KTRQSITAEM
RKRVGMKK
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