| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1889 |
|---|
| Symbol | |
|---|
| ID | 3716340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 2158122 |
|---|
| End bp | 2159540 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | isopropylmalate isomerase large subunit |
|---|
| Protein accession | YP_347621 |
|---|
| Protein GI | 77458116 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.169279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA AAACGCTCTA CGACAAGCTC TGGGATTCGC ATTTGGTCAA GCAGCGCGAC
GATGGCTCGG CGCTGATCTA TATCGATCGT CATATCATTC ACGAAGTGAC CTCGCCGCAA
GCCTTTGAAG GCCTGCGTCT GGCCGGACGC AAGCCGTGGC GCATCGATGC CAACATCGCC
ACCCCGGACC ACAACGTACC GACCACTCCG GAGCGCAAGG GCGGCATCGA AGCCATTGCC
GACCAGGTCT CGCGTTTGCA GGTTCAGACC CTCGATGACA ACTGCGATGA ATACGGCATC
GTCGAGTTCA AGATGAACGA CGTGCGCCAA GGCATCGTTC ACGTGATCAG CCCGGAGCAG
GGCGCGACCT TGCCGGGCAT GACCGTGGTC TGCGGCGACT CGCACACCTC GACCCACGGC
GCGTTCGGCG CCTTGGCCCA CGGGATCGGC ACTTCCGAGG TCGAGCACGT GCTCGCCACC
CAGTGCCTGG TCGCCAAGAA AATGAAGAAC ATGCTGGTGC GCGTCGAAGG TCAGTTGCCG
TTCGGCGTGA CCGCCAAGGA CATCGTCCTC GCGGTGATCG GCAAGATCGG CACCGCTGGC
GGTAACGGCC ATGCGATCGA GTTCGCCGGC AGCGCGATCC GCGATCTGTC CATCGAAGGC
CGCATGACCA TCTGCAACAT GTCCATCGAA GCCGGCGCCC GCGTGGGTCT GGTGGCGGCG
GACCAGAAGA CTGTGGATTA CGTCAAGGGT CGTCCTTTCG CACCGAAAGG TGCCGAGTGG
GATCTGGCGG TCGAGTCCTG GAAAGACCTG GTGTCCGACG CCGATGCGCA TTTCGACACC
GTGGTCGAGC TCGACGCCAC GCAGATCAAG CCGCAGGTCA GCTGGGGCAC TTCGCCGGAA
ATGGTCTTGG CCGTTGATCA GAACGTGCCG GACCCGGCTA AAGAGATGGA TCTGGTCAAA
CGCGACTCGA TCGTCCGCGC CTTGAAATAC ATGGGTTTGA CCGCCAATCA GGCGATCACT
GACATTCAGC TCGACCGCGT GTTCATCGGC TCCTGCACCA ACTCGCGCAT CGAAGACTTG
CGCGCTGCGG CGGTGATCGC CAAGGGTCGC AAGGTTGCGT CGACCATCAA GCAGGCCATC
GTCGTGCCGG GCTCGGGTCT GGTGAAGGCG CAGGCCGAGG CCGAAGGTCT GGACAAGATT
TTCCTCGAAG CCGGTTTCGA ATGGCGCGAG CCGGGTTGCT CGATGTGCCT GGCGATGAAC
CCGGACCGTC TGGAGTCCGG CGAGCATTGC GCCTCGACCT CCAACCGTAA CTTCGAAGGC
CGTCAGGGCG CCGGTGGCCG TACCCACCTC GTCAGCCCGG CCATGGCCGC TGCGGCGGCG
GTGAACGGTC GTTTCATCGA CGTTCGTGAA TTGATCTAA
|
|---|
| Protein sequence | MAGKTLYDKL WDSHLVKQRD DGSALIYIDR HIIHEVTSPQ AFEGLRLAGR KPWRIDANIA
TPDHNVPTTP ERKGGIEAIA DQVSRLQVQT LDDNCDEYGI VEFKMNDVRQ GIVHVISPEQ
GATLPGMTVV CGDSHTSTHG AFGALAHGIG TSEVEHVLAT QCLVAKKMKN MLVRVEGQLP
FGVTAKDIVL AVIGKIGTAG GNGHAIEFAG SAIRDLSIEG RMTICNMSIE AGARVGLVAA
DQKTVDYVKG RPFAPKGAEW DLAVESWKDL VSDADAHFDT VVELDATQIK PQVSWGTSPE
MVLAVDQNVP DPAKEMDLVK RDSIVRALKY MGLTANQAIT DIQLDRVFIG SCTNSRIEDL
RAAAVIAKGR KVASTIKQAI VVPGSGLVKA QAEAEGLDKI FLEAGFEWRE PGCSMCLAMN
PDRLESGEHC ASTSNRNFEG RQGAGGRTHL VSPAMAAAAA VNGRFIDVRE LI
|
|---|
| |