| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_1779 |
|---|
| Symbol | |
|---|
| ID | 3716577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 1976692 |
|---|
| End bp | 1979406 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | assimilatory nitrate reductase (NADH) alpha subunit apoprotein |
|---|
| Protein accession | YP_347511 |
|---|
| Protein GI | 77458006 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.377871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC AGACGACCGC CTCGACCTGC TGCTATTGCG GGGTCGGCTG CGGCGTGCTG
ATCGAGCATG ACGGCGAGCG CATCCTCGGC GTCAGCGGCG ATCCGGCGCA TCCGGCCAAC
TTCGGCAAAC TGTGCAGCAA AGGCTCGACC CTGCACCTGA CCGGCGATCT GGCGGCCAGA
GCGTTGTATC CGGAATTGCG CTTGGGCAAA GGCCTGGCGC GCAGTCGTTG CGACTGGGAC
ACCGCGCTGG ATCACGCCAC CAACGTGTTC GCCGACACCA TCGCCGAGCA CGGCCCGGAC
AGCGTGGCCT TCTACATCTC CGGGCAGTTG CTGACCGAGG ATTACTACGC CTTCAACAAA
CTGGCGCGGG CGCTGGTCGG CACCAACAAC ATCGACAGCA ATTCGCGGCT GTGCATGTCT
TCGGCGGTGG TCGGCTACAA ACGCAGCCTC GGCGCCGACG CACCGCCATG CAGCTATGAA
GACCTGGAGT TGAGCGATTG CGTGGTGATC GTCGGCAGTA ACATGGCCTA TGCCCATCCG
GTACTGTTTC GCCGTCTCGA AGAAGCCAAA TCCCGCCGCC CGCAGATGAA AGTCGTCGTC
ATTGATCCAC GGCGCACCGA CACCTGCGAT CTGGCGGACC TGCATCTGGC GATTCTGCCG
GGCACCGATG TCGCGCTGTT CCATGGGATT TTGCATCTGC TGTTGTGGGA AGACTGGATC
GACCGCGACT TCATCAAGGC CCACACCGAT GGCCTCGCCG AGCTGAAAAG CCTGGTGCGC
GATTACACCC CGGCGATGGT TTCGCAGCTG TGCGGGATCA GCGTCGAGCA GTTGCAGCAA
TGCGCCGAGT GGATCGGCAC CGCGCCGAGT TTTCTGTCGC TGTGGTGCAT GGGTCTGAAC
CAGTCCACCG CCGGCAGTGC CAAGAACAGC GCTCTGATCA ATCTGCATCT GGCCACCGGG
CAAATCGGCC GGCCGGGTGC AGGACCTTTC TCCCTGACCG GTCAGCCGAA TGCCATGGGC
GGGCGCGAAA CCGGCAGCCT TTCCAATCTG TTGCCAGGCC ATCGTGAAGT CGCCAATCCA
GAGCATCGCG CTGAAGTGGC GGCGTATTGG GGCGTGGATA AGCTGCCGGA AAACACCGGG
CTCAGCGCCA TCGAACTGTT TGAACAAGTG CGCGGCGGCA AGATCAAGGC GTTGTGGATT
GCCTGCACCA ACCCGGCGCA ATCGATGCCG GACCAGACCG CTGTGCGCGC AGCGCTGGAG
ACTTGTCCGT TCGTGGTGTT GCAGGAGGCG TTTCGCACCA CCGAAACCGC GGCGTTTGCC
GATCTACTGT TGCCGGCGGC CAGTTGGGGC GAGAAGGAAG GTTCGGTGAC CAACTCCGAG
CGGCGGATTT CCCATGTCCG CCAAGCCATT GCCGCACCGG GTGAAGCGCG TCCGGACTGG
GCGATTACCG TTGATTTCGC ACAACGCCTG GAGAAACGTC TGCGCCCGCA ACAGCCCGGT
CTCTTTGCCT TCGAGCAACC GGCGCAGTTG TTTGACGAGT ACAAACAACT GACCCGGGGG
CGCGATCTGG ATTTGTCCGG GATCAGCCAT GGGTTGATTG ATGAGCTGGG GCCACAGCAA
TGGCCCTTCC CCGCTGGCGC TCGCCAAGGC ACAGCCCGGC TGTATGGCGA CGGGATCTTT
CCTACAGCGA ACGGGCGCGC GCGGTTCGTT GCCGATCCCT ATCGCGCCGC CAAGGAACAA
CGCGACGCGC GCTTTCCCCT GACCCTGATC ACCGGCCGCC TGCGTGATCA ATGGCACGGT
ATGAGCCGCA CCGGCACGGC GGCGCAGTTG TTCGGCCATG TCAGCGAAGC CGTGTTGAGC
CTGCATCCGG ACGAATTGCG CCGTCACCGC TTGCAGCCGG GGGATCTGGT GAATCTGAAA
AGTCGTCGGG GCGCGGTGAT TGTGGCGGTC GCCAGCGATG ACAGCGTGCG TCCGGGCCAG
GCGTTCCTGC CGATGCACTG GGGCGATCGT TTCCTCAAGG GCGGCGTGAA CAGCCTGACC
CTGCCCGCCT TCGATCCTTT GTCGAAACAG CCGGAACTCA AGCACAGCGG TGTACGGCTG
GAACCGGTGG ATTTGCCATG GCAACTGTTC GCACTGATCG AGGGCGATGT TCAACGGCAT
TTCGAGGCGC TTCGACCGCT CTGTGAGGCG TTTTCCTACG CAAGTCTCAG CCTTGTCGGA
CGTGAACGGC CTGCGCTGCT GATACGCGCA GCCAGCGCCG TGGCGCCAGA ACCGCGTTTG
CTGCGTGAAA TCGACCAGTG CCTGGCCCTG ATCGACGGGC CGGTGCTGGC TTATGACGAT
CCTCGCCGCG CCATCGGCAA ACGGGTGCGC ATTGAAAACG GGCGCATCAC TGCGATCCGC
CTCGCTGGCG AAACCCTCGC TCAGCACTGG TTGCAAGGCC TGTGGCTGGA AGGTCGTGCC
GACGAACAAC TGCGGCGCTG GCTGCTGGCG CCGATGAGTG CACCGCCGGG CAATGCCGGG
GCGCAGGTTG TGGCGGACAA AACCCTGTGT AACTGCAAGA ACGTCAGCCA CAGCGCGGTC
TGCGCCGGTA TCCGTGAAGG TCTGGATCTG CAGGGTTTGA AAAACAAGTT GGGGTGCGGC
ACGCAATGCG GCTCCTGCGT CCCGGAAATC AAGCGTTTGC TGGCCGCCGA AGTGCGTCCG
GTCGCCGTTA TCTGA
|
|---|
| Protein sequence | MNRQTTASTC CYCGVGCGVL IEHDGERILG VSGDPAHPAN FGKLCSKGST LHLTGDLAAR
ALYPELRLGK GLARSRCDWD TALDHATNVF ADTIAEHGPD SVAFYISGQL LTEDYYAFNK
LARALVGTNN IDSNSRLCMS SAVVGYKRSL GADAPPCSYE DLELSDCVVI VGSNMAYAHP
VLFRRLEEAK SRRPQMKVVV IDPRRTDTCD LADLHLAILP GTDVALFHGI LHLLLWEDWI
DRDFIKAHTD GLAELKSLVR DYTPAMVSQL CGISVEQLQQ CAEWIGTAPS FLSLWCMGLN
QSTAGSAKNS ALINLHLATG QIGRPGAGPF SLTGQPNAMG GRETGSLSNL LPGHREVANP
EHRAEVAAYW GVDKLPENTG LSAIELFEQV RGGKIKALWI ACTNPAQSMP DQTAVRAALE
TCPFVVLQEA FRTTETAAFA DLLLPAASWG EKEGSVTNSE RRISHVRQAI AAPGEARPDW
AITVDFAQRL EKRLRPQQPG LFAFEQPAQL FDEYKQLTRG RDLDLSGISH GLIDELGPQQ
WPFPAGARQG TARLYGDGIF PTANGRARFV ADPYRAAKEQ RDARFPLTLI TGRLRDQWHG
MSRTGTAAQL FGHVSEAVLS LHPDELRRHR LQPGDLVNLK SRRGAVIVAV ASDDSVRPGQ
AFLPMHWGDR FLKGGVNSLT LPAFDPLSKQ PELKHSGVRL EPVDLPWQLF ALIEGDVQRH
FEALRPLCEA FSYASLSLVG RERPALLIRA ASAVAPEPRL LREIDQCLAL IDGPVLAYDD
PRRAIGKRVR IENGRITAIR LAGETLAQHW LQGLWLEGRA DEQLRRWLLA PMSAPPGNAG
AQVVADKTLC NCKNVSHSAV CAGIREGLDL QGLKNKLGCG TQCGSCVPEI KRLLAAEVRP
VAVI
|
|---|
| |