Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_1020 |
Symbol | rimM |
ID | 3716022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 1184704 |
End bp | 1185240 |
Gene Length | 537 bp |
Protein Length | 178 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_346752 |
Protein GI | 77457247 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.104306 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.553883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCGCGA CGCCAGAAAA AGCTGATGAC CTGATCGTTG TCGGCAAGAT TTTTTCGGTT CACGGCGTTC GCGGCGAGGT GAAGGTCTTT TCCTTTACCG ATCCGATTGA AAACCTGTTG GGCTATCGCA ACTGGACGCT TCGGCGCGAA GGCGTGGTGA AACAGGTCGA GCTGGTCAGC GGCCGATCCA CTCAAAAGGA TCTGGTTGTA AAGCTCAAAG GCCTCGACGA TCGCGATGAA GCCCGTCTTC TGAGCGGTTA CGAGATTTGC ATCCCGCGAA GCCTTTTGCC CGACCTGACT GCCGACGAGT ACTACTGGTA CCAGTTGGAG GGTCTGAGCG TCATCAACCA GGACGAACAA TTGTTCGGCA AGGTTGATCA CCTGTTGGAG ACCGGCGCGA ACGATGTATT GGTGGTCAAG CCCTGCGTTG GCAGCCTGGA TGATCGCGAG CGGTTGTTGC CCTATACGGA GCAATGCGTG CTGGCAATCG ACCTGGAAGC AGGCGTGATG AGGGTGGAAT GGGACGCGGA CTTCTAA
|
Protein sequence | MSATPEKADD LIVVGKIFSV HGVRGEVKVF SFTDPIENLL GYRNWTLRRE GVVKQVELVS GRSTQKDLVV KLKGLDDRDE ARLLSGYEIC IPRSLLPDLT ADEYYWYQLE GLSVINQDEQ LFGKVDHLLE TGANDVLVVK PCVGSLDDRE RLLPYTEQCV LAIDLEAGVM RVEWDADF
|
| |