Gene Pfl01_0465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_0465 
Symbol 
ID3712860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp539439 
End bp540473 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content64% 
IMG OID 
Productlipopolysaccharide heptosyltransferase II 
Protein accessionYP_346198 
Protein GI77456693 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTC TGATCGTTGG GCCCAGTTGG GTCGGTGACA TGGTGATGGC GCAGACACTG 
TTTCAGTGTC TCAAGCAGCG CCACCCGCAG TGCGAAATCG ACGTGCTGGC CCCGGAGTGG
AGCCGGCCGA TCCTCGAACG CATGCCCGAA GTGCGCAAGG CCTTGAGCTT CCCGCTCGGC
CACGGCGCGC TGGAGCTGGC GACCCGTCGG CGGATCGGCA AATCCCTGGC CGGCCAGTAC
GACCAGGCGA TCCTGCTGCC GAATTCGTTG AAGTCGGCAC TGGTGCCGTT CTTCGCCGGC
ATTCCGAAAC GCACCGGCTG GCGCGGCGAA TTCCGCTACG GCCTGCTCAA TGACGTGCGC
ACGCTGGATA AAGAACGTTA TCCGCTGATG ATCGAGCGTT TCATGGCGCT GGCGTTTGAA
CCGAACGCCG AACTGCCGAA ACCCTATCCG CGCCCGAGCC TGCAAATCGA CCCGGTGACC
CGCGAGGCCG CATTGGCCAA GTTCGGCCTG ACCCTCGACC GTCCGGTGCT GGTGTTGTGC
CCCGGCGCCG AATTCGGTGA AGCCAAGCGC TGGCCGTCTG AGCATTATGC CAAGGTCGCC
GAGGCGCGCA TCCGTGAAGG CTGGCAGGTC TGGCTGTTCG GTTCGAAGAA CGATCACGCG
GTCGGCGAAG ACATCCGCGC GCGGCTGATT CCGGGTCTGC GTGAAGAGTC GGTGAATCTG
AGCGGCGGCA CTTCGCTGGC CGAGGCCATC GACCTGATGT CCTGCGCCGA TTCGGTCGTC
TCCAACGATT CCGGCCTGAT GCACGTGGCC GCTGCGCTCA ATCGCCCGTT GGTGGCGGTC
TACGGTTCGA CCTCGCCGGG TTTCACCCCG CCGCTGGCCG AACACGTGGA AATCGTCCGT
CTGGGCCTCG ATTGCAGCCC TTGCTTCGAC CGCACCTGCC GTTTCGGCCA TTACAACTGC
CTGCGCCAGC TGATGCCGGA CGCGGTCAAC GATGCCTTGC AGCGTTTGCA GGGCTCTGTG
GTCGAGGTTC ATTAA
 
Protein sequence
MNILIVGPSW VGDMVMAQTL FQCLKQRHPQ CEIDVLAPEW SRPILERMPE VRKALSFPLG 
HGALELATRR RIGKSLAGQY DQAILLPNSL KSALVPFFAG IPKRTGWRGE FRYGLLNDVR
TLDKERYPLM IERFMALAFE PNAELPKPYP RPSLQIDPVT REAALAKFGL TLDRPVLVLC
PGAEFGEAKR WPSEHYAKVA EARIREGWQV WLFGSKNDHA VGEDIRARLI PGLREESVNL
SGGTSLAEAI DLMSCADSVV SNDSGLMHVA AALNRPLVAV YGSTSPGFTP PLAEHVEIVR
LGLDCSPCFD RTCRFGHYNC LRQLMPDAVN DALQRLQGSV VEVH