| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0400 |
|---|
| Symbol | |
|---|
| ID | 3712486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 453938 |
|---|
| End bp | 456172 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | |
|---|
| Product | primosome assembly protein PriA |
|---|
| Protein accession | YP_346133 |
|---|
| Protein GI | 77456628 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.756494 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATCC CCCGCGTGCC CGACGCCATT CTGCGCCTCG CCCTGCCTTC GCCCCTGCGC
CGCCTGTTCG ACTATCGGGC CCCGGCCGGT GTGCTGCGTT CGCAGTTGCA ACCGGGCATG
CGCCTGCGGG TGCCGTTCGG CCGACGGGAG ATGATCGGGA TTCTGGTGGA GGTCACTGAC
ACCAGCGAAG TGCCAGTGGA GAAGCTCAAA CCGGCACTGG CGCTGCTCGA CGTCACCGCA
CCACTGCCGC CAGCGCTGTT CAAGCTGTGC CTGTGGACGT CTCAGTATTA TCAGCACAGC
CTCGGCGACA CGTTGAGCTG GGCGCTGCCG GTGCTGTTGC GCCAGGGCGA ACTGGCCGAA
GTTCGGCAGG AACGCTTCTG GTCCGCCGCT CCCGGCGCCA GCCTCGATGA CCCACGCATC
GCCCGCGCCC CGCGCCAGCG TGAAGCCCTG GCGACTTTGG CCCAGCACCC TCACGGCGTG
GCCCATCAGT TGCTGAGCAA ACTGATGCTG AGCAAGGACA GCCTTGATCT GCTGCTGGCC
AAGGATCTGG TGCAGGTTGA AGTGCGGCGT CACGCCCCCG GCGCGCGCCA TGAACACTGG
CTGGCCCAGC CCGAGCTGCC GCTCAACAGC GAACAGCGCG CCGCCTATGA AGCGATTCGC
GCCGGGTTCG ACAGTTATCA CGCGTTCCTG CTGGCCGGGG TCACTGGCAG CGGCAAGACC
GAAGTCTATT TGCAGCTGAT CCGCGAAACC CTCGAGGCCG GCAAGCAGGC GCTGGTGCTG
ATCCCGGAGA TCAACCTCGG CCCGCAGACC CTCGCGCGGT TCGAACAACG CTTCAACGCC
CGCATCGCCC TGCTGCACTC GGCGGTCAAC GATCGTGATC GTCTGGATGC CTGGCTCGCC
GCCCGCGATG GCGAGGCCGA CATTATTATC GGCACCCGCT CGGCGCTGTT CACCCCGATG
AAGAATCCGG GGCTGATAAT CATCGACGAA GAACACGACG GCTCTTATAA ACAGCAGGAA
GGCCTGCGCT ACCACGCGCG GGATCTGGCG CTGGTGCGGG CGCGGCAGGA AAACATCCCG
ATCGTGCTCG GCTCGGCGAC GCCATCCCTG GAAAGCCTGC ACAACGCCTA CACCGGCCGT
TACGGACTCC TACGCCTGAA CGAACGGGCC GGAGGCGCCA AGCAGCCACG TTTCCTGCGC
CTGGATGTGA AAAGTCGCCC CCTGGACAGC GGCATTTCCG GGCCGATGCA GCAAGCAATC
GGCCAGACCC TCGCCGCCGG CCAGCAGGTA TTGGTGTTCC TCAACCGCCG GGGTTTTGCC
CCGACGCTGC TGTGCCACGA TTGTGGCTGG ATGTCCGAAT GCCAGCGCTG CGATGCGCGA
ATGACCGTGC ACCAGCGCTA CGGCGAGCTG CGCTGCCACC ACTGCGGTTA CGTGGAACGT
GTGCCGCGCC AGTGCCCGAA GTGCAACAAG GTCGATCTGC GCCCGGTGGG CGCCGGCACC
GAGCGGGCTG AGGAACGGCT GGCAATTCTG TTCCCGGACT ATCCGGTGTT GCGCGTCGAC
CGTGACAGCA CGTCGCGCAA GGATGCGATG AACCAGTTGT TCGCCACGAT CCAGAAAGGC
CAGCCGTGCA TTCTGGTCGG CACCCAGATG TTGGCCAAGG GGCACCACTT CCCTCGGGTG
ACGCTGGTGT CGATCCTCGA TGCCGACGGT GGGCTGTTCT CCGGCGACTT CCGCGCCAGC
GAGCGCATGG CGCAGTTGAT CGTGCAGGTT GCCGGCCGTG CCGGGCGGGC GGAAGAACCG
GGCAAGGTGA TCATCCAGAC CCACCTCGCC GACCATCCTT TATTGGTGCA ACTGACCGAG
CAGGGTTACT TCGCCTTCGC CGAACAGGCG CTGAGCGAAC GCCGCGCCGC CGGCCTGCCG
CCGTTCGCCC ATCTCGCCCT GCTGCGCGCC GAAGCCCACA AGCCAGGGCA GGCCGAAGGT
TTTCTCGATG AGGCATGCAG CGAGGCCGAG CGCTTGCTGG CCGAACAGAA CCTGAGCGGC
ATCGAATTGC TGGGGCCGGT GCCGGCACCG ATGGAACGTC GGGCCGGACG CTTCCGCGCG
CAGCTGCTGT TGCAGGCCAC GGCCCGGGCG CCGCTGCACC GATTGCTGGC GAGCTGGCTG
CTGGTGCTGG AGCAGATGCC AAGCGGTCGG GCGGTGCGCT GGTCGCTGGA TGTCGATCCG
GTGGATCTGT ACTGA
|
|---|
| Protein sequence | MRIPRVPDAI LRLALPSPLR RLFDYRAPAG VLRSQLQPGM RLRVPFGRRE MIGILVEVTD
TSEVPVEKLK PALALLDVTA PLPPALFKLC LWTSQYYQHS LGDTLSWALP VLLRQGELAE
VRQERFWSAA PGASLDDPRI ARAPRQREAL ATLAQHPHGV AHQLLSKLML SKDSLDLLLA
KDLVQVEVRR HAPGARHEHW LAQPELPLNS EQRAAYEAIR AGFDSYHAFL LAGVTGSGKT
EVYLQLIRET LEAGKQALVL IPEINLGPQT LARFEQRFNA RIALLHSAVN DRDRLDAWLA
ARDGEADIII GTRSALFTPM KNPGLIIIDE EHDGSYKQQE GLRYHARDLA LVRARQENIP
IVLGSATPSL ESLHNAYTGR YGLLRLNERA GGAKQPRFLR LDVKSRPLDS GISGPMQQAI
GQTLAAGQQV LVFLNRRGFA PTLLCHDCGW MSECQRCDAR MTVHQRYGEL RCHHCGYVER
VPRQCPKCNK VDLRPVGAGT ERAEERLAIL FPDYPVLRVD RDSTSRKDAM NQLFATIQKG
QPCILVGTQM LAKGHHFPRV TLVSILDADG GLFSGDFRAS ERMAQLIVQV AGRAGRAEEP
GKVIIQTHLA DHPLLVQLTE QGYFAFAEQA LSERRAAGLP PFAHLALLRA EAHKPGQAEG
FLDEACSEAE RLLAEQNLSG IELLGPVPAP MERRAGRFRA QLLLQATARA PLHRLLASWL
LVLEQMPSGR AVRWSLDVDP VDLY
|
|---|
| |