| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0050 |
|---|
| Symbol | |
|---|
| ID | 3717486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 55155 |
|---|
| End bp | 57245 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | putative diguanylate cyclase |
|---|
| Protein accession | YP_345783 |
|---|
| Protein GI | 77456278 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.315879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.219682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AAGCCCAGCG CTGGAAAGAG AAATACCTCA AAAGCATCGA ACAACAGGAA
AAGCTCGAAC GTCGATGGGA CGCCCGGCTC GACCTGCTGC GCCGCGGCCT GGTGCGCAGC
ACCCTGGCGG CGGAAGGCAC CGACCGCGTG GTCGATCAGT GCATGAAAGA GATGCGCGAC
GTGGTGCGCA CCGATGACAT GGACGCCGGC CTCGCCGCCC TGCTGCCACG CCTGGAAAAA
GCCGTGCTCG ATTCCGAGCA GCGCCGGGAA ACCCGGATCG AGCAGGTCAG CACCGCACTG
ACTGCACTGG TCACTCAATT GCAATCCCTG CCGCTGCCCC GAGAAGTGGC CCAGCCGCTG
AAGAAGTTCG CCAAGCAGCT GGACGGCCGG GTGAGTCAGG CAAGGGAAAT GCCGCTGCTG
CTCAGCGAAC TCAGCGGCCT GCAGGGCAAG GCCTTGAGTC AGCTGGCGAC GCCGACGGAA
CCGGGGCGTC CCGGGTTGTT GCAGCGCCTG TTCGGCAGCC GCGACAGCGA GGAAACCCCT
GCTCAAGTGG CCCAGGCTCC TGCGGTGACT CCGTCAGTGC AGCCAGAGCA ACCACCCGTC
ACACATGAAG CTGTGCCAGC GCCGCAAGCG CCTGTTACAA GCGCTGAACA GGTCGCCACT
GCGCCCGTCA GCCCAGCGCT GATCGCCGCC CCCGTGGCCG AACCATCCAA AGCTCCAGAG
CCAATCCCAG AAGACTTTAC AGAGCCGGAG GTGGTCGCAT TTGAGCCGGC CAGAATCCTC
ACCGAAGCGC CCAGCGCTCC CAGCGAACCA GAACCCGTCG AGCCGGAATC AAAGCTGCAA
CCCTTCACGC CTCCTCCGGT TTTCGCGCCG GCAGTGCCCA CGGCCATCAA CCCCGACGAG
TTGATCCTCC CCGGCGATAC CCCTCCGCCC GTGATCCTCG ACAGCCTGCC CCTGCCCGAA
CCCATCGCCC AGGCATTGGC CGCCATCGAT CCGGAACAAT CCGAGCATGA CATTCTCTAT
GCCCTGCCGG ACTCGCCAGA GCCGTCCTAC AGCTCGGTCG CCCGACACAT CGAAGACACG
CTGATTGGCT TGCTGGATGA CCTGACACTG CCGGAGCGCC ACCGCCCGCA AGCCGAAGCC
ATGCGCGACC GGCTGAAAAA TGGCCTTAAC TGGTACGAAC TACTACCGAT CCTCGACGAT
CTTGCGACAT TGATGCTGGC CATCACAGAC AGCGGCCAGC ACGAATTCGA AGCTTATCTG
CAGCAACTCA ATGAACGCCT CGAGGCATTC CAGAGCAACT TGCAGGCTGC CAGCGAAGGA
CACGCCGACA ACAGCTCCGC CGCGAGAGCA ATGGACACGC AGATCCGCGA ACAGGTCGAC
GGCTTGCAGA CCAGCGTCCA GGAGGCGGCG GATCTGAATG ATCTCAAGCA AGTGCTGGAA
AACCACCTCG AGGGCCTGCT CGGCACCATG GATCAGCACC AGAAGCAGCG CGACGCTCGG
GAACAGGAAG TCGCCGGACG CCTGAAAAGC CTGGCCGAGC GCGTCGCGCA CATGGAGCAG
GAAGCGCTGG GCTATCGCGA ACACCTCGAA GAGCAGCGCC AGAAAGCCCT GATCGATCCG
CTCACCGGCC TGCCCAACCG CGCGGCCTGG ACCGAACGGC TCGAACATGA AATCGCCCAG
TGGCAGCAGC ACGGCAACAC TCTGAGCCTG GCTATGCTCG ACCTCGATCA CTTCAAGCGG
ATCAACGACA ACTACGGGCA CCTGGCCGGT GACAAGGTGT TGAAGATCAT CGCCACAGTC
CTGCGCAAGC GTATGCGTGG CAACGATTTC ATCGCTCGTT TCGGCGGTGA GGAGTTTGTC
CTGCTGCTTC CAGCCACCCC ACCAGCGGTC GGCGCCAAAC TCCTGGAAAA CCTACGCGCC
TCCATCGAGG CCTGCCCGTT TCACTTCAAG GGCGAGCGCG TCACGATCAC GATCTCAATG
GGACTGGCGG CGTTTCGGCC GGGAGAACAC AGCGATCTGG TGCTCAAAAG AGCCGATCAG
GCGCTTTATC GGGCGAAAAA CGCGGGACGT AACCGGGTGG AGCTGGGCTG A
|
|---|
| Protein sequence | MSDEAQRWKE KYLKSIEQQE KLERRWDARL DLLRRGLVRS TLAAEGTDRV VDQCMKEMRD
VVRTDDMDAG LAALLPRLEK AVLDSEQRRE TRIEQVSTAL TALVTQLQSL PLPREVAQPL
KKFAKQLDGR VSQAREMPLL LSELSGLQGK ALSQLATPTE PGRPGLLQRL FGSRDSEETP
AQVAQAPAVT PSVQPEQPPV THEAVPAPQA PVTSAEQVAT APVSPALIAA PVAEPSKAPE
PIPEDFTEPE VVAFEPARIL TEAPSAPSEP EPVEPESKLQ PFTPPPVFAP AVPTAINPDE
LILPGDTPPP VILDSLPLPE PIAQALAAID PEQSEHDILY ALPDSPEPSY SSVARHIEDT
LIGLLDDLTL PERHRPQAEA MRDRLKNGLN WYELLPILDD LATLMLAITD SGQHEFEAYL
QQLNERLEAF QSNLQAASEG HADNSSAARA MDTQIREQVD GLQTSVQEAA DLNDLKQVLE
NHLEGLLGTM DQHQKQRDAR EQEVAGRLKS LAERVAHMEQ EALGYREHLE EQRQKALIDP
LTGLPNRAAW TERLEHEIAQ WQQHGNTLSL AMLDLDHFKR INDNYGHLAG DKVLKIIATV
LRKRMRGNDF IARFGGEEFV LLLPATPPAV GAKLLENLRA SIEACPFHFK GERVTITISM
GLAAFRPGEH SDLVLKRADQ ALYRAKNAGR NRVELG
|
|---|
| |