Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2895 |
Symbol | |
ID | 3707449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 3272426 |
End bp | 3274168 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637739371 |
Product | type II secretion system protein E |
Protein accession | YP_344871 |
Protein GI | 77166346 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.847539 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCGCAAC AACTTGGCAA AACTATTCCT ATTACGCCTG CTCCTGAAGA GGAGGCGGTT CCCCAAAGCC TGGAGGAAAA GCTTGGCGAG TATTTGATTG AGCGGCGCAA GCTGCGGGCA GGTGAATTCC GCCATGCCTG GCGTTTGGCG GAGGAGGAAG GGCTGCGGCT TTCCGTTATG CTCATAAGGC TGGGGTTGAT CTCGGAGCGG GATATGGCGG AAGCCTTTTC CGCCTTGCTC GATCTGCCGC TGCTAGCAAC GAACGATTAT GATAATAGCG ATCTGAACGG TCAAGTTTCA TTGCGGTTCC TCAAAGAATT CCGGGCCATT CCCGTGCTGG AGGAAGAGGA GGCAGTGGTG CTGGCGATGG CCGACCCTAG TGATGATTAT GTCCAGGAAG CCATTGCCCT GGCTTACAGC AAGCCCATCA GTCTGCGGGT CGGTTTGCCT TCGGATATTG AAGCGGCCCT TGATCGTCAG GCCGGGGGAA AATCGGCCAT GGGACAGATC GTCGAACATC TGGGGGCGGA CGAAGATGGG GAAACCGATG TCCAGCACCT GAAGGATATG GCCAGCGAGG CCCCGGTCGT CCGCCTGGTG AATTTGTTGA TTCAGCGTGC GGTGGAATCC CGAGCTTCGG ATATCCATAT CGAGCCTTTT GAAAACAGTC TTCGGGTCCG CTACCGGATC GATGGCGTGT TGCGGGATGT AGAGGCCCCC CCGGCGCGTT CCACCGCTGC TGTGATTTCC CGCTTCAAGA TTATGGCTAA GCTTAATATC GCTGAGCGGC GATTACCCCA GGATGGGCGA ATCCAGCTTC GTATCCAAGG GCGGGAGCTG GACTTGCGGG TCTCGACAGT GCCGACTCTG TATGGCGAGA GCGTGGTGCT TCGGCTGCTA GATAAAGGCA ATGTGGTGCT GGATTTCGAC TCCCTGGGCT TCCAGGGAAG TACCTTGGAG CGTTTTTTGC ATGTATTGGA ACAGCCCCAT GGAATTATTG TCGTCACGGG TCCCACAGGT AGTGGTAAAA GCACCACCCT TTATACCGCG TTGCATAAAC TCAATACTCC AGACCGAAAA ATTGTAACGG TGGAAGATCC GGTGGAGTAT CAGCTTGAAG GGATCAACCA AATCCAGGTT AAACCGCAGA TTGGCCTTAC TTTTGCGGGT GCTTTGCGGT CTATCGTGCG CCAAGATCCG GATGTCATCA TGATTGGTGA AATGCGGGAT AAGGAGACTG CTGGCATCGC GGTTCAATCG GCCCTGACGG GTCATGTGGT GCTCTCCACT CTCCATACCA ATGATGCGGC TGGAGGGGTT ACCCGCTTAT TGGATATGGG AATAGAGGAT TATCTGCTGA CCTCCACTGT CAATGGTATT TTGGCCCAAC GCTTGGTACG CACTCTCTGT AAACATTGCA GTGAACCTTA CGAGGCCCTG CCTGAACTTA TAGAGGAGCT GGAATTGCAT CGCTTCAGCC AGGAGAAACC CGTGATGTTG CATCGGGCCG TTGGCTGCGA GCAATGTAAC GGGATTGGTT ATCATGGGCG GGCGGCGATC ATGGAATTTC TGGTGATGAG CGATCCTATC CGCCGTCTTG TGCTCCAGCA TACCGATGCG GGGGAGATTC AAAAGCAAGC TCAGAAAGAA GGCATGCGTA TTATGTATGA AGATGGTCTT CATAAAGCAC TCTCTGGCTT CACTACTATT GAAGAGGTGA TCCGAGTCAG CCAGGAATCG TGA
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Protein sequence | MAQQLGKTIP ITPAPEEEAV PQSLEEKLGE YLIERRKLRA GEFRHAWRLA EEEGLRLSVM LIRLGLISER DMAEAFSALL DLPLLATNDY DNSDLNGQVS LRFLKEFRAI PVLEEEEAVV LAMADPSDDY VQEAIALAYS KPISLRVGLP SDIEAALDRQ AGGKSAMGQI VEHLGADEDG ETDVQHLKDM ASEAPVVRLV NLLIQRAVES RASDIHIEPF ENSLRVRYRI DGVLRDVEAP PARSTAAVIS RFKIMAKLNI AERRLPQDGR IQLRIQGREL DLRVSTVPTL YGESVVLRLL DKGNVVLDFD SLGFQGSTLE RFLHVLEQPH GIIVVTGPTG SGKSTTLYTA LHKLNTPDRK IVTVEDPVEY QLEGINQIQV KPQIGLTFAG ALRSIVRQDP DVIMIGEMRD KETAGIAVQS ALTGHVVLST LHTNDAAGGV TRLLDMGIED YLLTSTVNGI LAQRLVRTLC KHCSEPYEAL PELIEELELH RFSQEKPVML HRAVGCEQCN GIGYHGRAAI MEFLVMSDPI RRLVLQHTDA GEIQKQAQKE GMRIMYEDGL HKALSGFTTI EEVIRVSQES
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