| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2550 |
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| Symbol | |
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| ID | 3704553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 2900259 |
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| End bp | 2901218 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637739029 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_344533 |
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| Protein GI | 77166008 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.347335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGGGAAA CCATAGAACT AAGTATCACC CTTCCTTCTG AGCTGGCGGG AAAACGTTTA
GATCAAGCCC TGGCGCAGGT TTTCCCCGCC TATTCCCGTA GCCGCTTGCA GCAATGGATC
AAGCATGGGC AGGTCAAAGT AAATGATGCC CCTGCCCGCC CCCGGGATAC CGTTCAAGGG
GGTGAATGGA TTGTCGTTAT GGCGGAAGCG GAAGCGGAAG TTATCTGGAA ATCTCAGCCT
CTCCCCTTGG AGATTAGGTA CGAAGATGAA GCGATCATTG TAGTCAACAA ACCCGCTGGC
CTAGTGGTAC ATCCGGCCGC AGGTAACCGG GATGGCACCC TGGTCAATGC ACTCTTGCAC
CATGCGCCGG AGCTGGAGAG AATCCCGCGG GCTGGAATCG TCCATCGCCT TGATAAAGAT
ACCAGTGGCC TGCTGGTGGT AGCGCGGAAT CTTGTCGCCC ATCATGGCCT CGTCCGGCAG
TTACAGGCAC GCCAAATCAC CCGGGAGTAC CAAGCGATTA CCGTTGGTGT CATGACCGGT
GGGGGAAGGA TCGAAGCGCC TATCCAGCGC CATCCGGTAC ATCGTAAGCG AATGGCGGTA
ATTTCCACGG GAAAGCCTGC TCTCACTCAC TATCGGGTAT TGAACCGCTT TCGGGTCCAT
ACCCATGTTT CATGCCGCCT GGAAACAGGC CGGACTCACC AAATTCGAGT CCACTTGGCC
CATATTGGCT ACTCCCTACT AGGAGACCCC ACTTATGGGA AACGTCTGCA TATTCCTAGG
GAAAGTAGCG AAAAACTGAG CACTGCCTTG CGCCATTTCA AGCGCCAAGC CTTACATGCC
GCCCGCTTAG GTTTGGTTCA TCCGGAAAAG AAGCGGGAAA TGCGCTGGGA ATCGCCGCTT
CCAGAAGATA TGGCCACGCT TCTGGTCTTG CTTGAACAGG ATCGACAACG CCATAGATAA
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| Protein sequence | MRETIELSIT LPSELAGKRL DQALAQVFPA YSRSRLQQWI KHGQVKVNDA PARPRDTVQG
GEWIVVMAEA EAEVIWKSQP LPLEIRYEDE AIIVVNKPAG LVVHPAAGNR DGTLVNALLH
HAPELERIPR AGIVHRLDKD TSGLLVVARN LVAHHGLVRQ LQARQITREY QAITVGVMTG
GGRIEAPIQR HPVHRKRMAV ISTGKPALTH YRVLNRFRVH THVSCRLETG RTHQIRVHLA
HIGYSLLGDP TYGKRLHIPR ESSEKLSTAL RHFKRQALHA ARLGLVHPEK KREMRWESPL
PEDMATLLVL LEQDRQRHR
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