| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2540 |
|---|
| Symbol | |
|---|
| ID | 3704696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2890339 |
|---|
| End bp | 2890782 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637739019 |
|---|
| Product | general secretion pathway protein H |
|---|
| Protein accession | YP_344523 |
|---|
| Protein GI | 77165998 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.13206 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAG TACAACAGGG TTTTACCTTG ATTGAATTGA TGATCGTGGT GGCGATCATT
GGTATTTTGG CTTCTGTGGC CATCCCCGCC TATCAGGACT ACACCATTCG GGCAAAGGTA
TCTGAAGCGG TAACACTTGC TTCTGAAGCT AAAACGGCGG TTGCTGAAAC TGCAGCATCA
CTGGGGGGGT TAACGAACGT TACTGCAGCC AACTCCGGTT ATGAGCTTTC TAATAAGACT
GATTATGTAG ATAGTATTAT AATTGCAGAT GATGGTGTCA TTACTGTTAC TACGAAAGCG
ACGGGTGCTT CTACCCAGCC TGTATTTGTT CTAAAACCAA CGCAAACAAA CTCAGAAGAT
CCAATTACCT GGGTTTGTAC AACGTCTGCT GGGGAGTTGA AGCACGTACC GGCCTCATGT
CGTACCGCTA CCACAACTTC TTAA
|
|---|
| Protein sequence | MRKVQQGFTL IELMIVVAII GILASVAIPA YQDYTIRAKV SEAVTLASEA KTAVAETAAS
LGGLTNVTAA NSGYELSNKT DYVDSIIIAD DGVITVTTKA TGASTQPVFV LKPTQTNSED
PITWVCTTSA GELKHVPASC RTATTTS
|
|---|
| |