| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2516 |
|---|
| Symbol | |
|---|
| ID | 3704711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2863971 |
|---|
| End bp | 2865506 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637738995 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_344499 |
|---|
| Protein GI | 77165974 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA AATTAATCGT TTTCGATACG ACTTTACGGG ACGGTGAACA AAGCCCCGGT
GCTTCCATGA CTCGGGAAGA GAAGGTGCGG ATCGCTAAAG CCTTGGAACG TATGAGAGTC
GATGTGATTG AGGCGGGCTT TCCAGTAGCC AGCCAAGGTG ATTTTGAAGC GGTACAAGCG
GTGGCTAGAA GTGTGCGGGA GAGCACGGTG TGTGGTTTAG CCCGGGCGCT CGGGGCAGAT
ATTGATCGTG CTGGCGAGGC TTTGGCGGAG GCCGAGTCTG CGCGAATTCA TACTTTTATT
GCGACTTCGC CTATTCATAT GAAAAGGAAA CTCCGGATGG AGCCGGACCA AGTCCTAGAG
CATGCCGTTA AAGCCGTGAA ACGGGCGAGA GAATATACCG ATGATGTGGA ATTTTCCCCC
GAAGATGCAG GCCGTTCAGA GATCGAATTT CTATGCCGGA TTTTGGAAGC TGTTATTGCT
GCTGGTGCCC GGACCGTCAA TATCCCTGAT ACTGTAGGCT ACAATCTACC GGAGCAGTTT
GCTCAACTTA TCCGTACTCT GCGTGAGCGG GTATCAAACT CGGATAAAGC TATTTTCTCA
GTCCACTGCC ATAATGATCT AGGCATGGCG GTGGCTAATT CTTTGGCTGC CGTAATGAGT
GGCGCCCGAC AGGTAGAATG TACCATTAAT GGTCTGGGGG AGCGGGCTGG CAATGCTGCT
CTTGAGGAGG TGGTCATGGC GGTCCGCACT CGCCAAGATT CTTTTCCTTG CGATACTAAT
GTCGATATCA GCCAAATTGT TCCCACGTCT CGTTTAGTCT CGGGCATTAC CGGCTTTTCC
GTGCAGCCCA ATAAGGCTAT TGTGGGGGCC AATGCCTTTG CCCACGCATC AGGCATTCAT
CAGGATGGCG TGCTCAAGGA ACGCCAAACC TATGAGATTA TGAGTGCAGA AGACGTGGGT
TGGCATGCTA ATCAAATGAT CCTTGGCAAG CATTCGGGAC GCAACGCGTT CCGGGCCCGT
TTACGGGAAT TGGGTATTGA GCTTGAGACC GAGGAAGAAT TAAATGCTGC TTTCCAGCGT
TTCAAGGAAC TAGCGGATAA AAAACATGTG ATCTATGATG AGGATCTCCA GGCGCTGGTA
ACCGATGCTA ACTTGGCCGC TGAAAATGAG CGCTTCAAAC TCTCATGGCT TAAGGTGGTT
TCGGAAACAG GAGAAACCGC AATAGCGTCT GTCACCTTAA GTGTGGATAG TATAGAGCGG
CAGGCATCCG CTCCCGGGAG CGGACCGGTG GATGCTGCTT ATAAAGCTAT TGATTCTATT
CTTCAGAGTA ATACGGAATT ACTGCTTTAT TCAGTAAATA GTATTACTAG CGGCACGGAT
GCCCAGGGAG AGGTAACGGT TCGGCTGAAG AAAAATGGGC GCATTGCAAA CGGTCAGGGT
GCGGATACAG ATATTGTGAT GGCCTCGGCC AAGGCTTACG TCAATGCTTT AAACAAGATT
CTATACCCAG TAGAGCGGGC CTATCCCCAG GTTTGA
|
|---|
| Protein sequence | MKDKLIVFDT TLRDGEQSPG ASMTREEKVR IAKALERMRV DVIEAGFPVA SQGDFEAVQA
VARSVRESTV CGLARALGAD IDRAGEALAE AESARIHTFI ATSPIHMKRK LRMEPDQVLE
HAVKAVKRAR EYTDDVEFSP EDAGRSEIEF LCRILEAVIA AGARTVNIPD TVGYNLPEQF
AQLIRTLRER VSNSDKAIFS VHCHNDLGMA VANSLAAVMS GARQVECTIN GLGERAGNAA
LEEVVMAVRT RQDSFPCDTN VDISQIVPTS RLVSGITGFS VQPNKAIVGA NAFAHASGIH
QDGVLKERQT YEIMSAEDVG WHANQMILGK HSGRNAFRAR LRELGIELET EEELNAAFQR
FKELADKKHV IYDEDLQALV TDANLAAENE RFKLSWLKVV SETGETAIAS VTLSVDSIER
QASAPGSGPV DAAYKAIDSI LQSNTELLLY SVNSITSGTD AQGEVTVRLK KNGRIANGQG
ADTDIVMASA KAYVNALNKI LYPVERAYPQ V
|
|---|
| |