| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2125 |
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| Symbol | dapD |
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| ID | 3704929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 2448229 |
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| End bp | 2449050 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637738601 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_344115 |
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| Protein GI | 77165590 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.498857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGATT CTCAAGCAAT TATTGAAGAA GCTTTTGAGC GCCGCGCTGA AATTAGCCCT
CGCAAAGCAG AAACCCTGGT CAAGGATGCG GTGGAAGAAG CATTACACCT GCTTGATACG
GGCGAAGCCA GGGTAGCAGA AAAACAAAAT GGCGAGTGGA TAGTCAATGA GTGGCTTAAA
AAAGCCGTTC TTCTCTCGTT CCGATTATCG GACAACGTTT TTATAAAGGG GGGTTATACC
AACTATTTTG ATAAAGTTCC TTCCAAGTAT GCTGATTACA GCTCACGGGA CTTCCGCCAG
GATGAAGTTC GCATCGTGCC CCCAGCTTCC GTGCGTAAAG GCGCTTTTAT TGCGCCCAGC
GTCGTGCTAA TGCCCTCTTA CGTCAATATC GGCGCCTATG TGGACCGGGG AACCATGGTA
GACACTTGGG CCACTGTGGG CTCCTGCGCC CAAATTGGAA AAAATGTCCA TCTTTCTGGA
GGCGTGGGTA TTGGCGGGGT ATTAGAGCCC CTACAAGCCA AACCCACCAT TATCGAAGAT
AACTGCTTTA TTGGCGCCCG CTCTGAAATC GTGGAAGGGG TCATTGTAGA GGAAGGTTCA
GTGATTTCCA TGGGCGTATT CATTGGCCAA AGCACCCGAA TTTATCATCG GGAAACGGGT
ACCATCAGCT ACGGTCGTGT CCCCGCCGGC TCAGTGGTTG TACCAGGCAA TCTACCTTCT
CAAGACGGTA AATATAGTCT TTATTGCGCC ATTATTGTCA AACAGGTCGA CGAAAGAACC
CGTAGCAAGG TCGGGATCAA TGAACTCCTG CGGAATATAT AA
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| Protein sequence | MNDSQAIIEE AFERRAEISP RKAETLVKDA VEEALHLLDT GEARVAEKQN GEWIVNEWLK
KAVLLSFRLS DNVFIKGGYT NYFDKVPSKY ADYSSRDFRQ DEVRIVPPAS VRKGAFIAPS
VVLMPSYVNI GAYVDRGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAKPTIIED
NCFIGARSEI VEGVIVEEGS VISMGVFIGQ STRIYHRETG TISYGRVPAG SVVVPGNLPS
QDGKYSLYCA IIVKQVDERT RSKVGINELL RNI
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