| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2025 |
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| Symbol | |
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| ID | 3705176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 2336931 |
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| End bp | 2338028 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637738501 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_344016 |
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| Protein GI | 77165491 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCGGG CTCTGAAGCT AGCCCAGCGC GGTTTATTTA CTACTGACCC TAATCCCCGG
GTAGGCTGCG TCCTGGTGCG TGGCGGCGAA ATAGTAGGGG AGGGCTGGCA TCAACAGGCC
GGCGACTCCC ATGCGGAAAT CAACGCCTTG CGCCAAGCGG GTATTCGGGC CCAAGGGTCT
ACTTGTTATG TGACCTTAGA GCCTTGCTGT CACCGAGGGC GAACTCCACC CTGCACTGAG
GCTTTAATTG AGGCGGGCGT GGTGAGAGTT GTCGCGGCGA TGGGAGACCC TCATCCAAAA
GTCGCCAGCC AAGGATTGGC GCAACTTAGA GAGGCTGGTC TCCAAGTGGA GCATGGGTTA
TTGCAGGAAG AGGCTCAGGC CCTTAACGTG GGTTTTGTCC AACGCTTGGT CCAAGGTCGT
CCCTGGGTAC GTTGTAAGCT AGCCATGAGT TTGGATGGGG CCACGGCGCT AGCTTCTGGA
GAGAGTCGTT GGATTACCGC TTCCCCTGCC CGTCGGGATG TGCAGCGGTG GCGGGCCCGC
AGTTCCGCGA TCTTAACGGG GATTGGTACT GTCGTGCGAG ATGATCCCTC CCTCAACGTC
CGTTATGAAG AATTGCAAGA CGAGGTGCCG CCAGGGTTTA GCCGCCAACC ATTGCGCGTT
GTCCTGGACC GCCGATTAGC CATTATGGCG CAGGCCCGGT TGCTTTCGTT GCGGGGACCG
GTAATGATTG TATGCGCTGA TGCAACCTCA CCTAAAGCGG AATCTTTACG TGGCAGGGGT
GTGGAAGTGA TCAGCCTGCC GGTGACTCCC CAAGGGTTGG ACTTAATGGC CTTAATGGCG
GTTCTGGCTG CGCGGGAAAT TAATGAGCTT CATGTGGAAT GCGGTGCGCG GTTGGCAGGT
TCGCTGCTCC AGGCCGGTTT AATGGACGAG CTTGTACTGT ATATTGCTCC TAAATTGATG
GGAGAGGCCG CCTTAGGGTT ATTGCAACTG CCTGGCATTC AAACCATGAG GGATTGCATT
GAGGTAGACA TCAAGGAAAT GCGGGCGGTG GGTCAGGATT GGCGATTAGT GGCTAAGATA
GCGTCGCCTA GCAGATAG
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| Protein sequence | MARALKLAQR GLFTTDPNPR VGCVLVRGGE IVGEGWHQQA GDSHAEINAL RQAGIRAQGS
TCYVTLEPCC HRGRTPPCTE ALIEAGVVRV VAAMGDPHPK VASQGLAQLR EAGLQVEHGL
LQEEAQALNV GFVQRLVQGR PWVRCKLAMS LDGATALASG ESRWITASPA RRDVQRWRAR
SSAILTGIGT VVRDDPSLNV RYEELQDEVP PGFSRQPLRV VLDRRLAIMA QARLLSLRGP
VMIVCADATS PKAESLRGRG VEVISLPVTP QGLDLMALMA VLAAREINEL HVECGARLAG
SLLQAGLMDE LVLYIAPKLM GEAALGLLQL PGIQTMRDCI EVDIKEMRAV GQDWRLVAKI
ASPSR
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