Gene Noc_2021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2021 
Symbol 
ID3705172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2332023 
End bp2334458 
Gene Length2436 bp 
Protein Length811 aa 
Translation table11 
GC content50% 
IMG OID637738497 
ProductPAS sensor diguanylate cyclase/phophodiesterase 
Protein accessionYP_344012 
Protein GI77165487 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAGACA AGGCGCATCC TGAAGCAACC CGCTTCCGGG CTAAACAAGT CGAAATACTT 
TATGAGCAAT CGCATGTCGG ACAGGCCGCC AGCATAGTGG CAGCACTCAT CCTTATCGCA
GTATTCTGGA CCGTGACGCC ACATAGAACT CTGGCGGGCT GGGCCTTCTT CTTTACGCTT
GTCACTGTAC TGCGAGTTGG ATTGGCTCAT CGATACGCTC GCTCACCGGA CCACTCCAAG
CAGGTGGGTG AGTGGCTAGC ATGGTTTATG ACAGGGATAG GGATCTCCGG TGCAACCTGG
GGCTCGGCAG TTATTTTCCT TGTCCCCAAT GGTTCCCTGG TTCATACGGG ATTCGCAGCC
CTTTGGATCT GTGGATTATC CGCAGGCGCA ATAGCTACCT TCTCTATTAT TAAAGGCGCT
TTCTTTGCTT TTTCGCTTCC TGCGCTGCTC CCCAGCGCCT TGTATTTGAT AATAAGCGGA
GACATGAAAG AAGCCACCGT GGGGGGAGCG CAGTTGATGT TCCTGGGATT TATCTCTCTC
AGCGCGGTGC GGATGCACAA AACCCTAGTG CAAAGTTTAA CCCTTCAATT TGAAAACGCC
CGCCTGGTAG ATCATCTGGA TACGGAAAAA AAGAAGGTGG AGAAACTCAA CGAGCAACTA
GAAAAAAAGG TGCTCAAGCG AACCGCCGAA CTTGCCCAAG CCAATGCCAA TCTACAACGA
GATATTATCA AGCGCCAGCG TGCTGAGCAA GCTTTGTTCG CAGAAAAAGA GCTCCTTCAA
ATCACCCTCC ACTCTATCGG GGATGGGGTC ATTACCACGA ACGCCGAAGG CATCGTCGAA
TACTTGAACC CAGTCGCGGA AAAATTGACC GGCTGGTCGT GTGACAAAGC ACGGGGTTTA
CCGCTAGCAA CTGTGTTTCG GGTCATCGAC GAACAGACCC GTGAACCCAT TGCTGACCCT
ATCGCCCAGT GCCTAAAGGA AGGGGGCGCA ATCGAAATAG CAAATCATAG TGTGGTCATT
AGCCGGAACG GCCAAGAATA TGCTATTCAG GACTCGGCTG CTCCGATTAG CAGCCGCACG
GGAGAAGTAT TAGGCGTGGT TTTAGTATTC AGCGATGTCA CCGAAGCGCG CCATATGACG
CGTCAGATCA CCCACCAGGC CACCCATGAC TCATTGACCG GCCTAGTTAA CCGACGGGAG
TTCGAGCACC GCTTGGAGCG GGTGCTGGCA ACATTAAAAG CCGAATCGGC CGAGTACGCC
CTATGCTACT TTGATCTCGA CCGCTTCAAG GTCATCAATG ATACCTGCGG ACATGTAGCA
GGAGACGAAC TACTGCGGCA AGTCTCGGAA GTACTAAGGG GGCAAATTAG AAAACGGGAT
ACTTTAGCCC GTCTGGGTGG AGATGAGTTT GGGGTATTGC TAGAGCATTG TTCTCTAAAA
CAAGCCCAGC GGGTAGCTAC CGCAATACAC AAGGCTATCG AAGACTTTCA ATTTACTTGG
GAGGGCAAAA GTTTCCGTAT CGGTGTAAGC ATTGGGTTGG TTCCCATCAC CAAGGCTAGC
ATGGGAATCG CGGTAGTGCT AAAAGCTGCG GATACTGCCT GTTATGCGGC TAAAAACAAG
GGCCGTAACC GTATTCATGT GTACCACGAA ACTGATAAGG AACTAGCCTC TCACCGGGGA
GAAGTGCAGT GGATGACCCG AATACACCGC GCTCTTAAGG AAAATTACTT CCAAGTATAT
TTCCAACCCA TCATACCCCT TGCAACCGAA AAAGAGGAGA AGTGCTATGA GGTATTTCTG
CGGCTGGAGG ATGGCGCGGG AGGAGTAGTT TTACCTGGCG CTTTCTTACC GACAGCGGAA
CGTTATAATC TTGCAGTTAA AATTGACCGC TGGATGATCG CTAATACCTT TACCTGGTTA
GCCCAGAATC CTGAACCCCT GCGCACCTGT TTCATCAATT TGTCCGGGCA CTCACTCAGA
AACAAAACCT TTCTGGCCTT TATTATCGAG CAGCTTGAGA AAACCCCCAT ACCGTCTATC
CAGATATGCT TTGAAATCAC CGAAGCAGCA GCAACCGCCA ATCTCTCCTG TACCATCCGC
TTCATCAAAT CGCTAAAATC CCATGGTTGC AAGTTCTCAT TGGATGACTT TGGCAGTAGC
CTATCTTCCT TTGCTTATCT CAAAAATTTA CCGGTGGATT TTTTGAAGAT CGATGGTCTT
TTTGTAAAAG ACATCCTAGA CGATCCCATC GATTTAGCCA TAGTTCGCTC AATCAATGAG
ATAGGGCAGA TTATGAAAAA GCAGACGATA GCCGAATGGG TAGAAAAGGA AGAAGTACTA
GAGAAACTGC GAGAAATTGG TGTAAATTAT GCCCAAGGGT ATTGGATTAA TCCGCCCCAG
CCTCTCACAG AAATGAAATC CCCGCAAAAA AGATAA
 
Protein sequence
MLDKAHPEAT RFRAKQVEIL YEQSHVGQAA SIVAALILIA VFWTVTPHRT LAGWAFFFTL 
VTVLRVGLAH RYARSPDHSK QVGEWLAWFM TGIGISGATW GSAVIFLVPN GSLVHTGFAA
LWICGLSAGA IATFSIIKGA FFAFSLPALL PSALYLIISG DMKEATVGGA QLMFLGFISL
SAVRMHKTLV QSLTLQFENA RLVDHLDTEK KKVEKLNEQL EKKVLKRTAE LAQANANLQR
DIIKRQRAEQ ALFAEKELLQ ITLHSIGDGV ITTNAEGIVE YLNPVAEKLT GWSCDKARGL
PLATVFRVID EQTREPIADP IAQCLKEGGA IEIANHSVVI SRNGQEYAIQ DSAAPISSRT
GEVLGVVLVF SDVTEARHMT RQITHQATHD SLTGLVNRRE FEHRLERVLA TLKAESAEYA
LCYFDLDRFK VINDTCGHVA GDELLRQVSE VLRGQIRKRD TLARLGGDEF GVLLEHCSLK
QAQRVATAIH KAIEDFQFTW EGKSFRIGVS IGLVPITKAS MGIAVVLKAA DTACYAAKNK
GRNRIHVYHE TDKELASHRG EVQWMTRIHR ALKENYFQVY FQPIIPLATE KEEKCYEVFL
RLEDGAGGVV LPGAFLPTAE RYNLAVKIDR WMIANTFTWL AQNPEPLRTC FINLSGHSLR
NKTFLAFIIE QLEKTPIPSI QICFEITEAA ATANLSCTIR FIKSLKSHGC KFSLDDFGSS
LSSFAYLKNL PVDFLKIDGL FVKDILDDPI DLAIVRSINE IGQIMKKQTI AEWVEKEEVL
EKLREIGVNY AQGYWINPPQ PLTEMKSPQK R