| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1853 |
|---|
| Symbol | |
|---|
| ID | 3705117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 2105288 |
|---|
| End bp | 2106160 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637738333 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_343850 |
|---|
| Protein GI | 77165325 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAGC AAAATAGCAT AGGCTCTGAC GCAATACAGG ACCTACCTCA GCAAATTGAT
TACGACCTTA GCATGGCTGT TGAACGTTTC GACAGTTGGG TCGATGGCGC TATCCGATTA
TTGCCGAATA TCTTTTTGGC TCTCGTAGTA ATGATATTAT TCTATGGCTT GGCTGTACTT
GTCCGATGGC TCGTTCAGCG CCAATCAATC CGCCGGGGCC GCCACAACCT AGGAAGAATG
CTCGGCAGTT TTTCGAAATG GGCGGTTATC TTATCTGGTT TTTTGCTAGC GGCAACTATC
GTGTTGCCCA CTTTAAACCC TGGTGATTTG ATAGCGGGGT TAGGCGTCAG CTCTGTTGCC
ATCGGTTTTG CATTCAAAGA CATATTACAA AACTGGCTTG CCGGGTTACT GATTTTATTA
CGCCAGCCAT TTGAGGTTGA CGATCAAATC AAAGTTGATA GCCATGAGGG TACCGTCGAA
CAAATCGAGA CCCGCGCAAC GATTATTAAA ACTTATGATG GGCAGCGGAT TCTTATCCCA
AACAGCTACA TTTACACCCA TGCAGTGATA GTAAAAACAG CTTATGAAAA ACGCCGCAGC
CAATACGATA TTAATATAAA CTATGATAAT AGTGCCAATA GTATTGGAGA GACGTGCGAG
CGAATACGGG GTGCTATCGC CCAGGTTGCA GAGGTTGAAA CCAACCCGCC TCCTGAGGCC
CTAGCCTGGG ATTTAACCGA AGACAAAGTC ACCATCCGGG CACGCTGGTG GACAAATAGC
CACCGGACAA ATATGTCCCG AGTGCGTGCG GCAGTAATCA ACGCCATTAG GCAAGTCTTG
GACCAAAGCC GGACGGAACC CAAACCCCAT TAA
|
|---|
| Protein sequence | MAEQNSIGSD AIQDLPQQID YDLSMAVERF DSWVDGAIRL LPNIFLALVV MILFYGLAVL
VRWLVQRQSI RRGRHNLGRM LGSFSKWAVI LSGFLLAATI VLPTLNPGDL IAGLGVSSVA
IGFAFKDILQ NWLAGLLILL RQPFEVDDQI KVDSHEGTVE QIETRATIIK TYDGQRILIP
NSYIYTHAVI VKTAYEKRRS QYDININYDN SANSIGETCE RIRGAIAQVA EVETNPPPEA
LAWDLTEDKV TIRARWWTNS HRTNMSRVRA AVINAIRQVL DQSRTEPKPH
|
|---|
| |