Gene Noc_1648 details

Gene Information

• Locus tag: Noc_1648
• ID: 3705679
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 1843366
• End bp: 1843866
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637738124
• Product: Iron-sulphur cluster assembly transcription factor IscR
• Protein accession: YP_343650
• Protein GI: 77165125
• COG category: [K] Transcription
• COG ID: [COG1959] Predicted transcriptional regulator
• TIGRFAM ID: [TIGR00738] rrf2 family protein (putative transcriptional regulator); [TIGR02010] iron-sulfur cluster assembly transcription factor IscR

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.223295
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGCTAA CAACCAAAGG TCGTTATGCG GTGACCGCGA TGCTGGACTT GGCTTTACAT 
TATGAACAAG GTCCGATTAG CCTAGCTGAT ATTTCTCGCC GCCAAGGGAT TTCTCTCTCT 
TACTTAGAAC AACTCTTTGC TCGGCTACGC AAAAAAGGTT TAGTCGGCAG TGTTCGAGGT 
CCGGGGGGTG GTTATCGCCT AAGTCGTGAA GCGGGGAAAA TCAGCATAAT CGATGTTATC 
ACTGCGGTTG ATGAAAACAT GGACGCCACG CGTTGTGGGG GATTAAAAAA CTGCCAAGAG 
AACCAGCGCT GCCTTACCCA TGATCTGTGG GAAGATCTCA GCCGGCAGAT CTATGAATTT 
CTTGCCCGCA TTACTTTGGG TGAACTAGTT CAGCGTGATG ACATCAAAAA AGTTGCGATG 
CGGCTGGAGG ATGCTGTTTC GGTAAACAGT GTTGATCGTG CCGTACCCGT TGTTATTATA 
GGTACAAATC GTATTTCTTA A 

 

Protein sequence

MRLTTKGRYA VTAMLDLALH YEQGPISLAD ISRRQGISLS YLEQLFARLR KKGLVGSVRG 
PGGGYRLSRE AGKISIIDVI TAVDENMDAT RCGGLKNCQE NQRCLTHDLW EDLSRQIYEF 
LARITLGELV QRDDIKKVAM RLEDAVSVNS VDRAVPVVII GTNRIS