Gene Noc_1300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1300 
Symbol 
ID3706315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp1438866 
End bp1441010 
Gene Length2145 bp 
Protein Length714 aa 
Translation table11 
GC content53% 
IMG OID637737800 
ProductRelA/SpoT protein 
Protein accessionYP_343329 
Protein GI77164804 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00320424 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTTCAA CTCAACACCA CGCTGATCAT TTATCGCCTC AGTCTGCCTC CCAATTGGAA 
GAAGCCCGGG AGCTTCTAGC AGATCAAATT GATGATAAGA GCCAAGTGAT GTCTTTGATC
GTCCAGGGAG ACGCCATTGT GGAGTTGCTG GCAAAGTTGC AAGTAGATAC CGAGACCCAA
ATTGCTGGAC TATTGTTGCC AGCGATGGAA GCAGGGCTGC TTAAACAGGA AATTATCACC
AGAAATTTAG CTCCAACAAT TACTCGGCTA CTCCAAGGCG CTGAGCGCCT GGCGGTGCTA
AAACACTACC GTACTAATAA CGAAAAAGAT CCGATTCAAG CCGAAAAACT ACGTAAGATG
TTACTGGCTA TTGTGGAAGA CCCCCGGGTC GTCCTCGTAC GCTTGGCTGA TCACCTCTAT
CGCCTGCGCA ATGCTAACAA TGAAACCGCA GCGACTCGCC AAACTTTAGC CCAAGAAACT
CTGGATATCT TCGCCCCTCT GGCTAATCGC CTGGGTATCT GGCAACTCAA ATGGGAACTG
GAAGATTTAG CCTTGCGCTA TCTGGAGCCC CAGACTTACC AACGGCTAAC CAAAGCGCTG
AATAAGCGGC AGATAGACCG TGAGCGATAT ATTATCAAGG TAAAAGAACA GATCAAAGAA
GCACTTGCCC AGGCAGGCAT CCAAGGTCAA ATCAGCGGTC GCCCTAAACA TCTTTACAGC
ATCTGGAAGA AGATGCAGGC TAAAAACCTA GACTTCCATC AACTATTTGA TGTCCATGCC
TTTCGGGTCA TTGTGGTGGA TGTGAGGGAT TGCTATGCGG CCCTAAGCCT GGTACACACG
CTCTGGACAC CCATCCCTGA GGAATTTGAC GATTATATTG CCCACCCCAA ACCCAATGGT
TATCGTTCCC TGCATACCGC GGTTTTTGAC TCAGCGGGAA AACCCATGGA GATTCAGATC
CGCTCCTTGC AGATGCACGG GGAAGCCGAA CTGGGGGTCG CCTCTCACTG GCGCTATAAG
GAAGGGACAG AGCTGGATAC GGGTTTTGAG CAGCGCATTG CCTGGCTTCG AAGCTTTCTG
GACCGGAAGG AGACCGGCTC CAGTAGCACT GATCTCATTG AGCAATTCAA ATCCAAAGCC
TTCCATGACC GCATCTACGC GCTAACGCCT CGAGGACGAG TTATCGACTT ACCAGAAAAA
GCAACTCCCC TGGACTTTGC TTATGCCATT CATACTGAAG TCGGCCATCG CTGCCGGGGC
GCCAAAGTAA ACGGGGTCAT GGTGGCCTTA ACCCAACCAC TAGCCAGCGG TCAGGAAGTA
GAGATTCTCA CCACCCGGGA AGGCGCCCCC AGCCGGGACT GGCTTAATCT GCGCTTAGGT
TACCTCCATA CCCCAAGCGC TCGAGCCAAG ATTCAACGCT GGTTTAAGCA GCAAGATCAT
AGCCTCCATG CAGCCCGGGG CCGAACCCTG CTGGACCGGG AGCGGCAACG GCTCAAGCTT
GCGGAAGTGG ATTTAGCGCC ACTACTCAAG CGGTTTCGTC ACCCCCGCCC GGATAGCTTG
CTGGCATCGC TGGGCCGTGG AGATATCAGT CTTGGTCAGC TAAATACAGC ACTCCGAGAA
CAACAGCCGG AACCCTCCCT GCCAACGCCT GGGGTAGACC CACCCCCCAT GACCTCCTCA
AGAGCTGAAA ATGCTATCCA CGTACTAGGA GTCAGCGATT TGCTATCGCG CCTCGCCCGT
TGCTGCAGCC CTATCCCCGG TGACCCGATT ACAGGCTATA TCACCCAGGG GAGTGGAGTA
GCCATCCACC GCCGCGATTG CCCCAATATT ATTAAGCTCT CGCAAGAGCG TCAAAACCGT
CTGGTAGAGG TGGCTTGGCG CCACCCAACG GGAGAGGCCC ACTCCATGGA TATCTCAATT
CAGGCGGAAG ATCGTAAAGG ATTACTACAG GACATCACCC GCCTTCTGGC GAAAAAGGAT
ACTAACATTC TCGCCATCAA TACGGTCAGC GATCGCACCT CTGGACAGGC CCATATGCGA
TTGACCATTG AAGTAAGTGA TACCGAGCAG CTAAACAGCT TACTCAAACG TCTCACCGGA
CTTCCCGGCA TCATGAATGC CCGCCGCTTC AATCCAGGGA AGTAA
 
Protein sequence
MISTQHHADH LSPQSASQLE EARELLADQI DDKSQVMSLI VQGDAIVELL AKLQVDTETQ 
IAGLLLPAME AGLLKQEIIT RNLAPTITRL LQGAERLAVL KHYRTNNEKD PIQAEKLRKM
LLAIVEDPRV VLVRLADHLY RLRNANNETA ATRQTLAQET LDIFAPLANR LGIWQLKWEL
EDLALRYLEP QTYQRLTKAL NKRQIDRERY IIKVKEQIKE ALAQAGIQGQ ISGRPKHLYS
IWKKMQAKNL DFHQLFDVHA FRVIVVDVRD CYAALSLVHT LWTPIPEEFD DYIAHPKPNG
YRSLHTAVFD SAGKPMEIQI RSLQMHGEAE LGVASHWRYK EGTELDTGFE QRIAWLRSFL
DRKETGSSST DLIEQFKSKA FHDRIYALTP RGRVIDLPEK ATPLDFAYAI HTEVGHRCRG
AKVNGVMVAL TQPLASGQEV EILTTREGAP SRDWLNLRLG YLHTPSARAK IQRWFKQQDH
SLHAARGRTL LDRERQRLKL AEVDLAPLLK RFRHPRPDSL LASLGRGDIS LGQLNTALRE
QQPEPSLPTP GVDPPPMTSS RAENAIHVLG VSDLLSRLAR CCSPIPGDPI TGYITQGSGV
AIHRRDCPNI IKLSQERQNR LVEVAWRHPT GEAHSMDISI QAEDRKGLLQ DITRLLAKKD
TNILAINTVS DRTSGQAHMR LTIEVSDTEQ LNSLLKRLTG LPGIMNARRF NPGK