Gene Noc_1066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_1066 
Symbol 
ID3707191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand- 
Start bp1174592 
End bp1175269 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content53% 
IMG OID637737571 
Productrhomboid-like protein 
Protein accessionYP_343104 
Protein GI77164579 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.206905 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCCCA TCAGTGATAA CTATCCTGTT CAGCGCACCC CTATCGTTAA TTGGATTCTG 
ATTGGAACCT GCGTGCTTGT CTTCCTGTGG CAGTTAAGCC TGCCACAAGA AGGATTTCAA 
GCTTCAGTTA TTCTATTTGG ACTGATTCCC AAGGCTTTGA CGGATGCGCC CTTGGGCCAT 
CCTCAATTGC TAATTCCTCC CGTACTCAGT TTGTTTACCT CTATGTTTTT GCACGGTGGC 
TTCCTGCACC TGTTAGGTAA TATGCTCTAC CTTCATGTAT TTGGCAATAA CGTAGAAGAC 
TCCATGGGGC ATGGCCGCTT CATCGTTTTT TATTTACTCT GCGGCGTGGC CGCGGCGCTG 
GCGCAGACTT TTATAGCCCC CGATTCCACG ATCCCCATGG TGGGGGCTAG CGGCGCCATA 
TCCGGCATCC TCGGCGCTTA TCTGCTCTTG CACCCCTTCG CTCAGATTAA ACTACTGGTA 
CCCTATTTCA TCCTCTTTTT CGTTTGGGTG CCCGCCTGGC TCATGCTGGG TTTGTGGTTC 
TTGTTTCAGC TCTTGCAATC GGCAGCGACT CCGGGGGATG AAGGCGGCAT AGCCTTCGCC 
GCCCATGCTG GCGGGTTCAT GGCCGGCATG CTCCTGTTGC CGGTATTTAA ACGCTCCGAC 
GTCAGCCTAC TCCGTTAG
 
Protein sequence
MIPISDNYPV QRTPIVNWIL IGTCVLVFLW QLSLPQEGFQ ASVILFGLIP KALTDAPLGH 
PQLLIPPVLS LFTSMFLHGG FLHLLGNMLY LHVFGNNVED SMGHGRFIVF YLLCGVAAAL 
AQTFIAPDST IPMVGASGAI SGILGAYLLL HPFAQIKLLV PYFILFFVWV PAWLMLGLWF 
LFQLLQSAAT PGDEGGIAFA AHAGGFMAGM LLLPVFKRSD VSLLR