| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0843 |
|---|
| Symbol | |
|---|
| ID | 3707148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 920859 |
|---|
| End bp | 921836 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637737345 |
|---|
| Product | putative periplasmic protease |
|---|
| Protein accession | YP_342886 |
|---|
| Protein GI | 77164361 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAC TCCTCTCTGA ATATGGGCTC TTTCTAGCAA AAACGCTTAC TATCGTAATA
TTAATCGCAT TGCTAATAAG GTCATCAATC TCATCGAAAA GCCGAGTGCA GGCCGCCGAG
AAATTGGAGA TTAAGCATCT TAATAAATAT TATGAGCGTA TGACCCGGAC GCTCATGATG
CACCTCATGC CAAAGAAGGA ATTCGTAAAA AAGCTCAAGT CCGAAAAGGC CCATAAAAAT
AAACAAAAAT ACACCAAACG TGTTTTCGTG CTTGATTTTC ATGGGGATAT TAGAGCCACG
GCTGTAGCCT CGTTACGGGA AGAAATTACT GCGGTACTCA GCGTGGCAAC ACCAGAAGAT
GAGATACTAC TCCGATTGGA AAGTGGAGGC GGATTGGTTC ATGAGTATGG GCTGGCGGCT
TCCCAATTGG AGCGAATCAG GAAAAAACAA ATTCCATTGA TCATCGCCGT GGATAAAATA
GCAGCCAGCG GGGGGTATAT GATGGCTTGC GTGGGGAACC GCATTATTGC CGCGCCGTTT
GCTATCATCG GCTCTATTGG TGCCTTGATG CAGGTGCCCA ATTTCCACCG TCTACTGGAT
AAACACGGCA TAGACTTTGA GCAAATCAAA GCGGGCGAAT TAAAACGAAC GGTTACGCTG
TTTGGCATTA ACACCGATCA GGATCGTGAG TTGGCTAAAA AGCAAGTGGA GGATATCCAC
CAATTATTCA AAGAATTTGT TGCCCGCTAC CGCCCTGATA TGGATCTCTC ACAAACTGCC
ACGGGCCAAC ATTGGCACGC CATTCAAGCC AAGAAACTTA ACCTCATAGA TGATCTCGAA
ACCAGCGATG ATTACTTAGC TGAAGCTTGT AAAACCGCTA ATCTCTATAA AGTCACCTAC
ACTGTCAAAA AAACTTTCGC TGAACGATTT CTGGCACGGA CTCAAGCGGC GAGTGACAGA
ACCCTAGGTC CCTTCTAG
|
|---|
| Protein sequence | MSELLSEYGL FLAKTLTIVI LIALLIRSSI SSKSRVQAAE KLEIKHLNKY YERMTRTLMM
HLMPKKEFVK KLKSEKAHKN KQKYTKRVFV LDFHGDIRAT AVASLREEIT AVLSVATPED
EILLRLESGG GLVHEYGLAA SQLERIRKKQ IPLIIAVDKI AASGGYMMAC VGNRIIAAPF
AIIGSIGALM QVPNFHRLLD KHGIDFEQIK AGELKRTVTL FGINTDQDRE LAKKQVEDIH
QLFKEFVARY RPDMDLSQTA TGQHWHAIQA KKLNLIDDLE TSDDYLAEAC KTANLYKVTY
TVKKTFAERF LARTQAASDR TLGPF
|
|---|
| |