Gene Noc_0816 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0816 
Symbol 
ID3707101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp888949 
End bp891249 
Gene Length2301 bp 
Protein Length766 aa 
Translation table11 
GC content43% 
IMG OID637737318 
ProductOuter membrane protein 
Protein accessionYP_342859 
Protein GI77164334 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.468447 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTTGA AGTTTGTGAA AAAGCCAATA GCGGTTGCTA TTGTGGCACT GATTCTTATT 
GGCCAGGTGC TGGCGGCAGA ATTTCAAGAA TTTATAGTTA AGGATATACG GGTCGAGGGA
TTGCAACGGA TCTCCGCGGG TACGGTGTTT AATTATCTTC CGGTAAAAGT CGGCGATACG
ATTGATAGCC AGCGGGTTAA GGATACTATT CGTGGACTGT TCAGGACACG GTTTTTTAAG
GACGTGCGGG TAGAGCGCGA GGGCAATGTT CTAGTTGTGG TGGTGGTAGA GAGGCCTACG
ATTACTAGCA TCCAATTTGT GGGTAATAAA GAACTTAAAG GCGATCAGCT TTCGCAGGCT
CTTAAACAAG TAGGGTTTGC GGAGGGGCGT GTTTTTGATC GAGCGCTGCT GGAGAAGGTA
GAACTGGAAC TGCAACGCCA ATATTTTAGT CGTGGTAAAT ATGGCGTTAA AATTGATACG
ACAGTGACTC CTTTGGCCCG TAATCAGGTA GGTGTTACCG TAAATATTAA AGAGGGCGCT
ATTGCTAAGA TTGGCGGTAT CAATATCATA GGGAATCATG CTTTTAGTGA AGATGAGCTT
TTGGGTGCAT TTCAGTTAAG TACTTCGAAC TGGCTATCGT TTTTTACTCA TGATGATCAG
TATTCCCGGC AGAAATTGGC GGCGGATCTC GAAGCGTTAC GCTCTTATTA TTTAGATCGC
GGCTATATCA ACTTCAATAT TGATTCTACT CAGGTTTCAA TAACGCCTGA TAAAAAAAGG
GTATTTATTA CTGTCAATGT CACTGAAGGT GATCGCTACC AAATTGGTGA AGTTAAGTTA
GCCGGGGATT TAGTTCTTCC CCATGAGAAA CTGTTTGATG CTTTAACTGT GGCTTCGGGA
AAAGTTTTTT CACGCAAGGC CATAGCGGAA AGTACAACTC ATATTACTGA TTTGTTAGGA
AATAAGGGAT ATGCGTTTGC CAATGTAAAT GCTGTGCCAG AAATAAATGA AGAAGAAAAA
AAGGTAAATT TAACCTTTTT TGTTGATCCA GGTAAGCGTG CTTATGTTCG GCGGGTCAAT
ATTTCAGGGA ATACCAAAAC CCGGGATGAG GTGCTTCGCC GGGAGATACG TCAACAGGAG
GGAGGATGGG TAGCCACCGA GTTGATCAAT CGTTCCCGGT TGCGGATCCA ACGCTTAGGC
TATTTTGAAG ATGTTAATGT GGAGACAGTG CCGGTTCCGG GAACTACGGA TCAAGTTGAT
GTGAATTTTA GCGTAGTGGA ACGCCCTTCT GGATCCCTGT CGGCAGGTTT AGGTTTTTCT
CAATCCCAAG GTTTCATTTT TAATGCTAGT ATTACCCAGC GAAACTTTCT GGGGAGTGGT
AAGCATGTAA GCTTTGCTTT TAATAATAGT CAGGTGAACA CCATCTATAG TTTTGGATAT
ACTAATCCCT ACTATACTAT TGATGGTATT AGTCGCGGAT TTAACCTTTT CTATCGTGAA
ACCAGTCCTT TTAGAGCCAA TATTGCCCGT TTTAGTACCG ATGCGTATGG CGGCGATATG
CATTTCGGTA TTCCGGTCAC TGAAAATGAT AGGGTGCGCC TTGGTTTTGG TTACCAGCAT
ACGAAGGTTA ATCTAACTGA AAATTCTCCC CAGGAATACC ATAAGTTTGT AGATAGTGAA
GGAAATAAGT TTGATACTTT TAATACGAAT TTAGGCTGGT CTCGTGATAG CCGGAATAAT
GCTCTCTTAA CGACTGATGG CAGTATTCAA AGCCTCTTCG GTGAGATTAC CCTGCCGCTA
GGTAGTTTGC AATTTTTTAA GTTTGGTTAT CGTCACCGTT GGTTTCATCC TTTATCTAAA
TCTCTTACTT TGATGCTAAA TGGCGATGTA GCCTATGGCA ATGCCTATGG AAATACCGAA
GAGTTCCCTT TCTTTGAGAA CTTTTTCGCT GGTGGTATAC ATAGTGTGCG CGGCTTCAAG
GCTAATACGC TTGGTCCAAA GGCATCAGAT GGTACTACCC TTGGCGGCAA TTTTAAGATG
ACAGGGACTA TTGAGGTATT CTTTCCTGTT CCCTTTGCGG AAGAATTAAA GTCCGTGCGT
TTGGGTACTT TTATTGATGC AGGGAATGTC TACGGTATAG ATCAAGATAT TAGCCTGCAA
GGCCTGCGGT ACTCAGCTGG AATTTCAGCC AATTGGCTAT CGCCATTTGG TAGCCTGCAA
TTTAGTTTTG CGAAAGCCTT TAATGTTCAG CCAAATGACC GGCCTGAAGT ATTCCAGTTC
TCCCTGGGAA CTTCATTTTA G
 
Protein sequence
MSLKFVKKPI AVAIVALILI GQVLAAEFQE FIVKDIRVEG LQRISAGTVF NYLPVKVGDT 
IDSQRVKDTI RGLFRTRFFK DVRVEREGNV LVVVVVERPT ITSIQFVGNK ELKGDQLSQA
LKQVGFAEGR VFDRALLEKV ELELQRQYFS RGKYGVKIDT TVTPLARNQV GVTVNIKEGA
IAKIGGINII GNHAFSEDEL LGAFQLSTSN WLSFFTHDDQ YSRQKLAADL EALRSYYLDR
GYINFNIDST QVSITPDKKR VFITVNVTEG DRYQIGEVKL AGDLVLPHEK LFDALTVASG
KVFSRKAIAE STTHITDLLG NKGYAFANVN AVPEINEEEK KVNLTFFVDP GKRAYVRRVN
ISGNTKTRDE VLRREIRQQE GGWVATELIN RSRLRIQRLG YFEDVNVETV PVPGTTDQVD
VNFSVVERPS GSLSAGLGFS QSQGFIFNAS ITQRNFLGSG KHVSFAFNNS QVNTIYSFGY
TNPYYTIDGI SRGFNLFYRE TSPFRANIAR FSTDAYGGDM HFGIPVTEND RVRLGFGYQH
TKVNLTENSP QEYHKFVDSE GNKFDTFNTN LGWSRDSRNN ALLTTDGSIQ SLFGEITLPL
GSLQFFKFGY RHRWFHPLSK SLTLMLNGDV AYGNAYGNTE EFPFFENFFA GGIHSVRGFK
ANTLGPKASD GTTLGGNFKM TGTIEVFFPV PFAEELKSVR LGTFIDAGNV YGIDQDISLQ
GLRYSAGISA NWLSPFGSLQ FSFAKAFNVQ PNDRPEVFQF SLGTSF