| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0815 |
|---|
| Symbol | |
|---|
| ID | 3707100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 887334 |
|---|
| End bp | 888698 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637737317 |
|---|
| Product | peptidase M50, putative membrane-associated zinc metallopeptidase |
|---|
| Protein accession | YP_342858 |
|---|
| Protein GI | 77164333 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.225956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATTG TACTAGCTAT ACTCGCTTTT GCGATTGCTA TTGGGGTGCT CGTTGCCGTA
CACGAGTATG GCCATTTTTG GGTGGCACGG CGATCTGGCG TTAAGGTTCT GCGATTCTCC
ATTGGTTTTG GTCGGCCATT ATGGCGTTGG CGTGGAAAGG ATCAAACCGA GTATATACTC
GGATCGCTGC CTTTGGGGGG ATATGTCAAG ATGCTCGATG AGCGGGAAGG AGAGGTTGCC
AAGGAGGATC TCCCGCGCGC CTTTAATCGA CAGTCCCTCG GTATTAGAAG TGCCGTCGTC
GCTGCGGGGC CAGTAGCGAA TATCTTATTT GCTATCATTG CCTACTGGTT AGCATTTGTC
TTTGGTATTG CCGGGATCAA GCCTATTGTA GGTGAAATAA TGGTCGACAC TCCGGCGGAT
AGAGCCGGCT TCCGAGTTGG TGAAGAGATT ATTGCGGTGG GAGAGCAAAC TACCCCCACT
TGGGCTTCGG TGCGTCATGC AATATTTGTG GCTTCTCAAC ATGAATCTCG TGTTCCCGTG
ACTGTTTCTG GTGCTGGAGG AGAACAAAAG TTAAGCTTGG ATTTGAGTCA AGTCCAAGTA
GACGTCGATC CTGAAAAAGC CAGGGATATA TTGGAGCAGT TGGGAGTGCA GCCTGAGCGC
CCCTTATTGG CGCCGGTGAT TGGTGAGGTT TTGCCAGGTG AACCTGCAAG GCAGGCGGGT
TTTCAACCGG GGGATCGCGT TCTCTCAGCC GCGAGTCAGC CTATTCGCAC GTGGAATGAA
TGGGTAGAGT TTGTGCGCGA TCACCCTGGT GAGGCTTTTA ACGTTGAGAT TGAGCGTGGG
GAAGAGCGGC TGATTCTAAA CTTGCAGCCA GCGATCATAG AGGGGGAGCA GGGTCCCGTT
GGACGTATTG GCGCAGCACC AGAGCCACCG GGCGAATTGC CGGAGGAATT ACGGGCTACT
TTAAGGTATT CTCCCTTTGC GGCAATTTCC CGGGCGGTTG AGAAGACGTG GGAAATCGGA
TCGTTAACTG TGCTTATGCT GGGTAAAATG CTGGCGGGAG AGGTATCAAC CAAATCTATC
AGTGGACCCA TCACGATTGC ACAATATGCA GGGTATAGTG CGCAGATAGG TTTTGTCCCT
TTCCTCAACT TCCTTGCGGT GGTGAGTATT AGTCTAGCGG TTCTAAATCT GCTGCCTGTT
CCTGTTTTAG ACGGGGGGCA TTTATTATAT TACTTTATTG AGCTGATACG AGGTAAACCT
CTGTCAGAAA TGGCCCAAGC GGTGGGACAG CAAATTGGTA TCGTGGCACT CATTGGGCTG
ATGTGTTTAG CTTTCTATAA TGACTTTGTC CGTTTGCTTG GATAA
|
|---|
| Protein sequence | MSIVLAILAF AIAIGVLVAV HEYGHFWVAR RSGVKVLRFS IGFGRPLWRW RGKDQTEYIL
GSLPLGGYVK MLDEREGEVA KEDLPRAFNR QSLGIRSAVV AAGPVANILF AIIAYWLAFV
FGIAGIKPIV GEIMVDTPAD RAGFRVGEEI IAVGEQTTPT WASVRHAIFV ASQHESRVPV
TVSGAGGEQK LSLDLSQVQV DVDPEKARDI LEQLGVQPER PLLAPVIGEV LPGEPARQAG
FQPGDRVLSA ASQPIRTWNE WVEFVRDHPG EAFNVEIERG EERLILNLQP AIIEGEQGPV
GRIGAAPEPP GELPEELRAT LRYSPFAAIS RAVEKTWEIG SLTVLMLGKM LAGEVSTKSI
SGPITIAQYA GYSAQIGFVP FLNFLAVVSI SLAVLNLLPV PVLDGGHLLY YFIELIRGKP
LSEMAQAVGQ QIGIVALIGL MCLAFYNDFV RLLG
|
|---|
| |