| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0316 |
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| Symbol | dapF |
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| ID | 3706487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 342181 |
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| End bp | 343011 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637736830 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_342374 |
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| Protein GI | 77163849 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTATTG CTTTTACCAA AATGCAGGGT TTGGGCAATG ATTTCGTAGT CATTGACGCC
CTTTCCCAGC CGCTGTCCTT AACCGCCTCC CAGGTACGCT GGATTGCCAA TCGCCGCTTG
GGCATAGGCT GTGACCAAGT GTTATTAGTA ACGCCTGCTT CTTTGCCAGC GATCGACTTT
GGTTATCGGA TTTTTAATGC TGACGGCGGC GAGGTAGAGC AATGTGGTAA TGGTGCCCGA
TGTTTTGCCC GCTTTGTGCG GGAGCAGGGG CTTACCGACA AAAATGTGCT GCGGGTCCAG
ACTGCAAGCG GCATTATTGA GCTGCAATTA GAAACTGATG GGCAAATCAC GGTAGACATG
GGTGTGCCCC GTTTTGCTCC CCATCAAATC CCGTTTAAGG TAGACCAGGA GGCAGACTAT
TATTCACTGG AGCTCGATGG GCAGCAGGTG GAAATTGGAG CCGTATCCAT GGGCAACCCC
CACTGTGTAT TGCGGGTACC CGCTGTTGAT ACTGCCCCGG TAGCCCATTG GGGACCCTTG
CTGGAAAGCC ACCCCCGCTT TCCTCAGCGG GTGAATGTGG GGTTTGCGCA AATCGTCTCC
CCCGGCCATC TCCGGCTGCG GGTTTATGAG CGAGGCGCTG GCGAGACCCC CGCTTGCGGA
ACTGGAGCCT GCGCTGCCGC GGTGATAGGC AAGCGGCGGG GCTGGCTGAG TGGACAAGTT
AATGTGGATC TGCCTGGCGG GCGCTTAGGT ATTCACTGGG AAGGCGATGG TAAATCTGTT
TGGATGAGCG GACCGGCAGA GATTGTATTC AAGGGAAGTA TCGAGCTATG A
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| Protein sequence | MRIAFTKMQG LGNDFVVIDA LSQPLSLTAS QVRWIANRRL GIGCDQVLLV TPASLPAIDF
GYRIFNADGG EVEQCGNGAR CFARFVREQG LTDKNVLRVQ TASGIIELQL ETDGQITVDM
GVPRFAPHQI PFKVDQEADY YSLELDGQQV EIGAVSMGNP HCVLRVPAVD TAPVAHWGPL
LESHPRFPQR VNVGFAQIVS PGHLRLRVYE RGAGETPACG TGACAAAVIG KRRGWLSGQV
NVDLPGGRLG IHWEGDGKSV WMSGPAEIVF KGSIEL
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