| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0293 |
|---|
| Symbol | |
|---|
| ID | 3706464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 320380 |
|---|
| End bp | 321924 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637736808 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_342352 |
|---|
| Protein GI | 77163827 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.287992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAC TGAGATTTGG GTTGCTAGGA TCGCTTTTTC TGTTGGCGGC TTGTAGTGCT
GGCCGAGAAT CACCCCAGGA GGGAACGCCC GAACTGGGGG GAATCAGTAT CACTGATTTT
ACCGATAAGA CGGAACTCTT TGTCGAATTC TTGCCCCTAG TGGTAGGCCA GGAGTCTGCC
TTTGCTGTCC ATCTGACCCA ACTTGAGGGC TTCCTGCCCA TGGCTCAAGG GCGCGTGATC
GTGTTCCTGG GAGGAGGAGA TCTTCCCCTC GAAAAATTCG TTGCCGATGG TTCCCAGGTT
CCCAGAATCT TTCGGCCAAT CGTCAAGCCC CAGAATCCAG GGCGGCGCCA ATTGGCTATC
CGGTTGGTCG CTCCGGCTTT TACCGTGACT CATTTCCTCG GCGGAGTAAC GGTTTATCCA
GACTTGAAGA CTGCTGCTCA CGCCCATCCC CCGGAAGCGG AGAAGGAAAG GGGAATCACT
TTCTTGCTGG AGCAGCAATG GCAGGTGGAT TTTGCCCTCG AAGCGGTCCG GCCCCATACC
TTGCGGGAGT CGGTGGCGGC TACCGGGGTG GTGCGCCCCC GTTCTGACGG CGAAGTCTGG
ATTCATGCGC CAACGGCAGG GCACCTGCTC ACCCACGGTA GCGATTTTCC CCAGGTGGGC
ATGGCTGTTA CGCAAGGCCA AATCCTGGCC CAGATTGCCC CCCGTATGGC GGGGGAGGCG
GACTTTGCCT CGTTACAACT GGCGGTGCAA AAGGGCCATT CCCAATATCA ATTTGCTGCC
CATGAGCGTC AACGCCTGGA AGATCTGTTT AAACAAAACG CCATGCCTAA ACACCGTCTG
ATTGAGGCCC GGAAAGAGGA AACTATCGCC AAGGCTGAAC TGGAAGCCGC CCAGCGCCGT
CTAGCGCAGT ATCAAGTCCT ATCTTCCGGG ACACTTGTTG GCGTGCCTGT CCGGGCCCCT
ATCAAGGGTC TCCTGACCCA GGTTCAAGTG ACGGCAGGCA GTTACCTGGC AACAGGCCAG
GCATTATTTC ATGTGGTACA AACGGACCGC CTTTGGTTGG AAGCCCGAAT CGCGGAAGCG
GACCTGGGGC GCTTGCACGA TCCTACCGCT GCTTGGTTTG AAGTAGAGGG CTTCGAGCAG
CCCTTCCGGA TTGGCCCGGC CCAGGGCGCG CGGCGGGTGA CGTTTAGTAT GGAGGTCGAT
GAGGTAAGCC GGACCACGCC CCTAGTGTTC GAGTTCCCCA ACCCTAACCC AGCCCTGCGT
ATCGGGATGT TTGCCCAGGT CCATGTGCTC ACTGGCAAGA AGGTCCATGA TCTCACCGTT
CCCCGCTCGG CGCTGGTGGA TCACAATGGC CAAGTGGTGG TTTACGTTTT GCTGGGAGGA
GAGTCTTTCG AGCGCCGCAG CGTGCAATTA GGTATTCGCG ATGGTAACTA TGCGCAGGTC
CGTGAAGGAC TGTCCGCTGG TGAGCGCATT GTTACCCACG GCGCTTACTT GGTTCATCTG
GCGGCGGCTT CCCCCGCCGC ACCGGGCCAT GGTCACGCTC ACTGA
|
|---|
| Protein sequence | MKILRFGLLG SLFLLAACSA GRESPQEGTP ELGGISITDF TDKTELFVEF LPLVVGQESA
FAVHLTQLEG FLPMAQGRVI VFLGGGDLPL EKFVADGSQV PRIFRPIVKP QNPGRRQLAI
RLVAPAFTVT HFLGGVTVYP DLKTAAHAHP PEAEKERGIT FLLEQQWQVD FALEAVRPHT
LRESVAATGV VRPRSDGEVW IHAPTAGHLL THGSDFPQVG MAVTQGQILA QIAPRMAGEA
DFASLQLAVQ KGHSQYQFAA HERQRLEDLF KQNAMPKHRL IEARKEETIA KAELEAAQRR
LAQYQVLSSG TLVGVPVRAP IKGLLTQVQV TAGSYLATGQ ALFHVVQTDR LWLEARIAEA
DLGRLHDPTA AWFEVEGFEQ PFRIGPAQGA RRVTFSMEVD EVSRTTPLVF EFPNPNPALR
IGMFAQVHVL TGKKVHDLTV PRSALVDHNG QVVVYVLLGG ESFERRSVQL GIRDGNYAQV
REGLSAGERI VTHGAYLVHL AAASPAAPGH GHAH
|
|---|
| |