Gene Noc_0237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0237 
Symbol 
ID3706292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp260991 
End bp262334 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content52% 
IMG OID637736753 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_342297 
Protein GI77163772 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAGA AGCTTTATAT TAAGACTCAT GGCTGTCAGA TGAATGAATA CGATTCTAGC 
CGGATGGCCG ATGTATTGCG GGAATCCCAC GGGCTAGAAC TGACTTCTGA CCCTGAGCAA
GCGGAAGTGC TGTTACTCAA TACCTGCTCC GTGCGGGAAA AAGCCCAAGA AAAAGTCTTT
TCCCAGTTGG GCCGATGGCG GCAGCTAAAG CAATCGCGTC CTGAATTAGT TATTGGGGTC
GGCGGCTGTG TTGCTAGTCA AGAGGGTGAA ACGATTCGCG TCCGGGCGCC CTATGTGGAT
CTGGTGTTTG GACCCCAAAC AATACACCGG TTACCAGCAA TGCTGACTCA GGCAAAGGCA
AGCTCACAGC CAGTGGTCGA TCTTTCTTTT CCTGAAATTG AGAAGTTTGA CAAATTGCCT
GAACCCCGCG CTGAGGGTCC AACCGCTTTT GTCTCCGTGA TGGAAGGGTG TAGCAAGTAT
TGCTCTTTTT GTGTCGTGCC TTATACCCGG GGCGAGGAAA TCAGCCGGCC TTTCGACGAT
GTCATTGCCG AGATCGTGGG TCTGGCGGAG CAGGGAGTGC GGGAAATTAC CCTGTTAGGC
CAGAACGTGA ATGCCTATCG GGGGTCCATC GGGGAGGGAG ATACTGCCGA TCTTGCCCTG
CTGATCCACT ATGTGGCCTC TATTGAGGGT ATTGAGCGCA TCCGCTTCAC GACTTCTCAC
CCGGTAGAAT TCTCCGACAG CCTCATCCAG GCTTTTGCCG AGGTGCCAGC GCTGGTTAGC
CATTTGCACT TACCAGTACA GAGTGGCTCG GATCGTATGC TGAGTTTGAT GAAACGGGGT
CACACTGTGC TGGAGTATAA AGCGAAGCTG CGGAAATTGC GCCAGGTGCG TCCTGATATC
AGTATTTCAA GCGATTTCAT CGTTGGCTTG CCCGGCGAGA CTGAGGCTGA TTTCCAGGCT
ACGCTAGCGT TAGTGGATGA GGTGGGTTTT GATCATTCTT TCAGTTTTAT TTATAGTCCA
AGGCCGGGAA CACCAGCGGC TAGCCTTCCT GATTGCACAC CGATAGCCCT CAAGAAAGAG
CGGCTTGCAA TCCTGCAAGG ACGTCTTCGA GCTCTGGAAA TTGCTATTAG TCGAGGGATG
GTGGATACCG TACAGCAAGT ACTCGTTGAA CGTCCCTCAA AGAAAGATCC CACCATGCTG
GCGGGGCGTA CGGCTAATAA CCGGGTAGTA AATTTTTCTG CCTCTCAAGA CATGGTAGGC
CAGTTTGTCA ATATTAGAAT TACAGAGGCT CTGCCCAACT CGCTGCGGGG TATCGTTCTT
GATGCTAAAA GACGATGTGC TTAA
 
Protein sequence
MAKKLYIKTH GCQMNEYDSS RMADVLRESH GLELTSDPEQ AEVLLLNTCS VREKAQEKVF 
SQLGRWRQLK QSRPELVIGV GGCVASQEGE TIRVRAPYVD LVFGPQTIHR LPAMLTQAKA
SSQPVVDLSF PEIEKFDKLP EPRAEGPTAF VSVMEGCSKY CSFCVVPYTR GEEISRPFDD
VIAEIVGLAE QGVREITLLG QNVNAYRGSI GEGDTADLAL LIHYVASIEG IERIRFTTSH
PVEFSDSLIQ AFAEVPALVS HLHLPVQSGS DRMLSLMKRG HTVLEYKAKL RKLRQVRPDI
SISSDFIVGL PGETEADFQA TLALVDEVGF DHSFSFIYSP RPGTPAASLP DCTPIALKKE
RLAILQGRLR ALEIAISRGM VDTVQQVLVE RPSKKDPTML AGRTANNRVV NFSASQDMVG
QFVNIRITEA LPNSLRGIVL DAKRRCA