Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_0177 |
Symbol | |
ID | 3706210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | + |
Start bp | 196685 |
End bp | 198019 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637736694 |
Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
Protein accession | YP_342240 |
Protein GI | 77163715 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0229474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGCCTA TCGAAGAAGT ATCGCAAGAT ACGATGGCTT TTGTGGTGGC GCCGGGGGGG GCGCTGAGGG GTCGGTTACG GGTTCCCGGG GATAAGTCTA TCTCCCATCG GGCTATTATC TTGGGCGCGT TGGCCGAGGG TATTACCCAG ATCACTGGGT TTTTGGAGGG AGAAGATACT CTGGCAACGT TGCAGGCCTT TCGGGATCTC GGGGTAAGCA TTGAGGGACC TGAGGGAGGA CGGGTAAAAA TACATGGTGT AAGTCTACAG GGTTTACGGG CGCCGGAAAA ACCCCTTTAT TTAGGTAACT CAGGAACATC AGTGCGATTA CTCGCCGGTC TTTTCGCCGG CCAATCCTTT GATGTCATAC TTAGGGGCGA TGAGTCTCTC TCTCGCCGTC CCATGCGGCG AGTCTGTGAC CCCTTAGCCC GAATGGGCGC TTTTATCGAG ACGACGGCTC AAGGTACTCC CCCCCTACAC ATTCATGGCG GACAGTCACT GTATGGTATT GAATATGCGA TGCCGATGGC CAGCGCCCAA GTCAAATCCA GCCTGTTATT GGCGGGACTT TATGCATCGG GACGAACCTG TGTGGTTGAG CCTGCTCCGA CAAGGGATCA CTCTGAGCGT ATGCTGGCCG GTTTTGGCTA CCCCGTAGAG CGAGAGGGTG CAAAAGTTTG TATCCAAGGG GGGGGAACGT TGCATGGTAC TGTGGTTGAG ATCCCTGCAG ATATTTCTTC GGCGGCCTTT TTTATGGTGG GAGCCGCGAT TGGTAAGGGT TCGGATATTT TATTGGAGCA TGTCGGTATC AATCCGACCC GGACAGGAAT TATTGATATT CTCCGGCGTA TGGGAGCAGA AATTGAAATA AGAGAAACAG GTGTAGTTGG CGGCGAACCG GTAGCAGCGA TACGGGTCCG AGCTAGCCGG TTGCATGGGA TTAATATTCC TGAAGACCTG GTTCCGTTGG CGATAGATGA ATTCCCGGCC CTATTTATAG CCGCGGCTTG TGCCGAAGGC GAGACGGTAT TGGCTGGAGC TGGAGAGCTG AGGGTTAAAG AAAGTGACCG TATCCAGGTG ATGGCTGATG GTTTGCAAGC TTTGGGAATT TCTGCTCAGC CCACGGCGGA TGGAATTATT ATCCAAGGGG GAGAATTGCA AGGGGGAGAG GTCCATAGTC ACGGCGATCA CCGATGCGCC ATGGCCTTTG CCATGGCTTC CCTAGTTGCC AAGGGCCCTA TTATTATTCG TGATTGCGCC AATGTGGCCA CTTCTTTTCC GGGTTTTTTG GAGTTAGCTT GTGGTGCTGG TTTAGCAATT CGCCATGGAA AATAG
|
Protein sequence | MQPIEEVSQD TMAFVVAPGG ALRGRLRVPG DKSISHRAII LGALAEGITQ ITGFLEGEDT LATLQAFRDL GVSIEGPEGG RVKIHGVSLQ GLRAPEKPLY LGNSGTSVRL LAGLFAGQSF DVILRGDESL SRRPMRRVCD PLARMGAFIE TTAQGTPPLH IHGGQSLYGI EYAMPMASAQ VKSSLLLAGL YASGRTCVVE PAPTRDHSER MLAGFGYPVE REGAKVCIQG GGTLHGTVVE IPADISSAAF FMVGAAIGKG SDILLEHVGI NPTRTGIIDI LRRMGAEIEI RETGVVGGEP VAAIRVRASR LHGINIPEDL VPLAIDEFPA LFIAAACAEG ETVLAGAGEL RVKESDRIQV MADGLQALGI SAQPTADGII IQGGELQGGE VHSHGDHRCA MAFAMASLVA KGPIIIRDCA NVATSFPGFL ELACGAGLAI RHGK
|
| |