Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_0078 |
Symbol | |
ID | 3705916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 79413 |
End bp | 85016 |
Gene Length | 5604 bp |
Protein Length | 1867 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637736598 |
Product | excinuclease ABC subunit A |
Protein accession | YP_342145 |
Protein GI | 77163620 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTAAAG CATTTATCAA GGTCAAGGGC GCACGGCAGA ATAACCTTAA AGGGCTTAAT CTCAAATTTC CCCTCAATGA GCTGATTGTG ATCACGGGAG TCAGCGGCTC GGGTAAATCC TCTCTGGCTT TCGACACCAT TTATGCCGAG GGGCAGCGGC GCTATGTGGA AACCTTCTCC CCCTATGCCC GGCAATTTCT GGATCGGATG GACAAGCCCC AAGTGGATCG TATCGAGGGA ATTCCCCCGG CCATTGCCAT CGATCAAATC AACCCGGTCC GGACCTCCCG CTCCACTGTA GGGACCATGA CGGAGTTGAA TGATCATCTG AAGCTTTTAT TTGCCCGGGC CGGAAAACTT TACTGCCAGG GCTGCGGGCA AGGGGTGCGG CGGGACACGC CGGAGGGTAT TTATAAGGAG CTTCTTCTTC ACTCCCAAGA ACAAGACGAC ACTCCCCGGA TCTTAATCAC TTTTGAGATT ACCGTTCCCG AAAATTTTTC CTTCCAGGAA GTAAAAGACC AGCTCCTACG GCAGGGCTAT ACTCGCTTCC ATCACCAGCA TGATCAGGTA TTAGAGGCAA TTCAGGATCG GGTCCGCTTG GAGCCGAGCC GGCGGGAGCG GATTATGGAA GCCCTGGAAA CGGCTCTCAA ACATGGCCGT GGCCATGTTA CGGTTTATCC CCTAGATGAG CACCGCCAAC CTCAACAGCC CTGGCGCTTT TCTTCTGATC TCCACTGCCC CCAATGTGAT ATCGCCTACC AGGACCCCTT TCCTAGCCTG TTTTCTTTTA ACTCCCCTTT GGGGGCCTGC GGGACCTGCC GGGGCTTTGG CCGGACCATG GGGATTGACT ATGATTTAGT GGTACCTGAT GAAAATAAAA CCCTGGCCGA GGGGGCCATC AAACCCTGGC AGAGCGCCAG CTATGAAGAA TGTCAGCAAG ATTTGATGCG TTTTGCCCGC AAGCGGGGGA TTCCCACTCG CCTCACCTGG CGCGAGCTTA CCCCTGAGCA GCAGCATTGG GTGCTGGCGG GAGAAGGGGA ATGGGAGGAA AATAAGTGGT ATGGAGTCCA GCGTTTTTTC GACTGGCTGG AAAGCAAAAG CTACAAAATG CACATCCGGG TGCTGTTGTC TAAATACCGG GCTTATCATC TTTGCCCCAC CTGCCAGGGG GCGCGCCTCA AACCCGAATC CTTGCTGTGG CGGCTGGGAA CCAAAGCCGG CGCCGACGAG GTATTACCAG ACAAAAGACG GTTTATGCCT GCGGGAGTAC GATTCTCCCA GCGGCGATTG GCGGCTTTAC CTGGTCTGAC CCTCCATGAT GTGATGCAGC TTTCCCTTAA ACGCTGCCAG CAATTTTTTG CTCAGCTTAC CCTATCTGCT CCTTTGGACG AAGCTGCTGA TTTGCTGCTA GGTGAGATTC GCTCCCGGCT CAATTATCTG GTGGAGGTGG GGCTAGGTTA TCTGACGTTG GACCGTCAAT CACGGACCTT AAGCGGGGGA GAAGTGCAGC GGATCAATTT GACCACTGCT TTGGGCACTT CCCTGGTCAA TACTTTGTTT GTCTTGGATG AGCCGAGCAT TGGTTTACAC GCCCGTGATT TGCAGCGCAT CATCCGGATA CTGCAACGCC TGCGGGATGC GGGCAATTCC CTGCTCCTAG TGGAGCATGA TTCCCAGATA ATGCTGGCCG CCGACCGCAT TTTAGATCTG GGGCCTGGAC CGGGAGAACG GGGCGGTCAA CAAGTATTTT TCGGCCCTCC CCAGGAATTG ATGCAAGCCA AACGTTCCCT CACCGGCCAA TACTTGACAG GTAAAAAGCG GGTCGTCTCC GAACGTCGTA AAACCAGAAA GCTCCCAGCG TCGGCCTATG TGGAAATCCG GGGCGCTGCG GAGCACAATC TCAAAAATAT TGATGTCCGC TTTCCCCTCA ATGGCCTGGT TTGCGTGACC GGCGTTAGCG GTTCGGGTAA ATCCACCCTG ATTCAAGAAA TTCTGTATAA GGGATTACGC AAGCTCAAAG GCAAACCGGT GGGCACACCC GGCCGTCATC AAGCCCTTGA AGGCCATGAA CATATTCAGA CGGTAGTGTT GGTGGATCAA TCCCCTATCG GTAAAACCAC CCGCTCTAAT CCCATTAGTT ATGTGGGCGC CCTGGATGGC CTGCGCAAAG CCTTTGCCGC CGAGCCCCTG GCCCAGGAGC GAGGCTATCA TGCCGGCACC TTTAGCTTTA ACACCGGGAA GGGACGCTGT CCCACCTGTG GCGGCCGTGG TTTTGAGCAG GTGGAAATGC AGTTTCTCAG CGATATCTAT CTGCGCTGCC CCGATTGTAA TGGTCAGCGT TACCGACCTG AAATACTGGA GGTCAAACTG CAACCTTCGG CCCAGGGACT GGGCAAATCC ATTGCCGAGG TGCTGGCCAT GACGGTGGCC GAAGCCCTAG ATTTTTTCGC CGATTACCCG GAGATCAAGC GGGGAATCGA ACCTCTCCAA GCAGTAGGGA TGGGTTATGT GACATTGGGT CAGCCGGTGC CCACCTTAAG TGGAGGCGAA GCCCAGCGGC TTAAACTGGC GGGACACCTG GCCAAGGCGC GGGGGAATAA ACAGGGCCGC AACACGCTGT TTTTACTTGA CGAACCCACA ACGGGCCTCC ATTTCGATGA TATTGCCACC TTGCTCCAAG CCTTTTACCG CCTACTGGCG GAAGGTCACT CTCTGGTGGT CATTGAACAT AACCTGGAGG TAATCCAAGC AGCGGACTGG ATCATTGATT TAGGGCCCGA GGGGGGCGAA GGCGGAGGCA AGGTGATCGC TATGGGGTCT CCCCAGAAGG TCGCCCGGTC CCAGCATAGT CACACGGGCC AGGCTTTGCG GGACCACGCC CAAGCGTTTG ATGAGATCTT CCAGGCTGCC TCTGCCGTGG GCGAAGCGCC CGCACAATAC AGGACAGCCT GCGGAACTGC TCAAACCGAG GCTGCCCCCC AGGAATCGGG CGCGGCAGCA GAAGGCAATG GGTTCATTTA TATCCATAAT GCCCGGGAGC ATAACTTAAA GAATATTGAT GTCCAAATTC CCCGGGAGCG CCTTACCGTG ATTACCGGCA TCTCCGGTTC CGGGAAGAGT ACAGTGGCAT TTGATATCCT CTTTGCCGAA GGGCAGCGCC GTTATTTGGA ATCTCTTAAT GCCTATGCCC GGCAGTTTGT TCAACCGGCT GCCCGTCCCG ATCTGGACGC CATCTTTGGT ATTCCACCCA CAGTAGCTAT CGAGCAGCGT ACCAGCCGAG GGGGACTCAA GAGCACGGTA GCCACCCTCA CCGAGATTTA CCATTTCCTG CGCCTGCTCT TCGTTAAGCT GGGACAGCAA CATTGCCCCG ATTGCAAAAT TCCCATTGAG GCCCAAACCC TAGAGGCTAT CCAGGCCCGG CTTATGGGGG ACTATCGGAA CCGCCGTTTG GGGATATTGG CCCCCTTGAT CGTCGCCCGC AAAGGCTATT ATACCGAGCT AGCCAAATGG GCTGCCGCCA AAGGATTTAC CCACCTGCGG GTGGATGGGA CGCTGCTTCC CACAGATCCC TGGCCTCGGT TGGATCGCTT CAAGGAACAC TCCATTGAAT TGCCGGTAGG AGAGCTCAAG GTTACCCCCG CAGCAGAAAA AGAACTCCAT GCCCTGCTGG AGCAGGCTCT TAATCTGGGC CAGGGCAGGG TGGAAATTCT TCTTCCCCAA AAGAAGCAGA AGATTCTCTA CTCAACTCAA CGGGCTTGTC CAAGTTGTAG CCGCAGCTTT GGAGAACTGG ACCCTCGCCT GTTCTCCTTT AACTCCCCAC AAGGTTGGTG CCCCCGCTGT TATGGCACCG GGCGGGTGCT GCCCAATTTT GATGGAGAGC AAACCGGGGA AGAAAAAGAA TGGGCCGAGA AGCAGGGAAA TCCGGGCCAA ATTTGCCCTA CTTGCCAGGG ACAGCGCTTG CAGCCCGAAG CCCTGGCGGT GCGTTTCCAG GAGCGGAATA TTGCTGAATT TACCGGCATG CCAATAGCAG TGGCCGAGGC CACCTTTCAG TCCATGAAGC TGCAAGGGCG GGCGGCGGAC ATCGCCCGAG ATATCCTGCC CGAGCTGCGA ACTCGGTTGA AATTCCTCAG AGAGGTGGGA TTGTCTTATT TAACGCTGGA CCGGGCCGCC CCAACCCTCA GCGGTGGGGA AGCCCAGCGT ATCCGCCTAG CTTCCCAGCT CGGCTCCAAC CTGCGGGGTG TATGTTATAT CCTGGATGAA CCCACCATCG GTCTTCATCC CCGGGACAAT AGAATGCTTC TGAATACCTT GGGCAAGCTG GAGGGCCAAG GCAATACCAT TGTGGTGGTG GAGCATGACG AAGACACTAT CCGGCGGGCC GAACATGTCA TTGACTTGGG GCCAGGGGCC GGGGTGAATG GAGGCAAAGT GGTGGCTGCG GGCACGGTGG AAGCACTGCT CCAACATCCA GAATCCGTCA CCGGGCGCTG CTTGGCCCAA CCCTTGCCCC ATCCCCTCAT GGAAAAGCGC CGCCCCGAAA CAGCCGAAGC CCACCTGGAG ATTCGGGGAG CTTCCCTGCA CAATTTGAAA AGTCTAACTC TCCGTTTACC CCTAAGACAG TTGGTGGGGG TGAGCGGAGT GAGCGGCAGT GGCAAAAGTA CTCTGATACG GCAGGTGCTC CATGGGAACC TCCTGCGCCT GCTGAATCGA AAGCAGACGG CCCAACATAA GGAGACTACC ACCTTTCAGG GCTGTCAGGA AATTCGTGGC TGGAAAGCTA TCCAGCGGGT GCTGGAAGTC GATCAGACCC CCATTGGCAA AACGCCCCGC TCTTGTCCGG CTACCTATGT GGGTTTTTGG GACTCTATCC GGCGTTTGTT TGCCGACACG CCGGAGGCCC GTATCCGGGG TTATGGAGCA GGCCGATTCT CCTTTAATAC CAAGGAAGGC CGGTGCCCAG AATGCGAGGG TCAGGGCGTA AAAAGAATTG AAATGAGCTT TTTACCGGAT GTGACCGTTC CCTGCGAATC CTGCCGCGGA GCCCGTTTTA CCCAAGAAAC TCTGATGATC CGCTACAAGG ACAAAAACAT TGGTGAGATT TTAGCCCTGA GTGTTGATCA AGCCGTTGAG TTTTTTGCCG CCCATAAACG AATTCATCGG CCTTTGCAGT TGCTGCAAGC GGTAGGATTA GGCTACCTGA GCCTTGGTCA ACCGAGTCCG ACCCTCAGCG GGGGCGAGGC CCAGCGAATT AAGTTGGTGA CGGAGCTAGC CAAGGCCCCT CTGAATCCCT ATCGTAGTGC TAATCAGCAC ACCCTTTATC TCTTGGATGA ACCCACCATT GGACTCCACA TGGCGGATGT GGAAAAACTT ATCCGGGTTT TGCACCAGTT GGTGGAAGTG GGCAATACCG TGATCGTCAT TGAGCATAAT CTGGACATTA TTGCCGAGGT GGACTGGCTT ATCGACCTGG GTCCGGAAGG AGGTGATGGC GGGGGGCAAA TTGTTGCCCA AGGAACACCA GAGACCGTTG CAAAAGTTAA AAAAAATTCT TATACAGCAA AATTCCTTAC CCGTTTTTTA AAAACGCGCC GTGCCATAAA TTGA
|
Protein sequence | MSKAFIKVKG ARQNNLKGLN LKFPLNELIV ITGVSGSGKS SLAFDTIYAE GQRRYVETFS PYARQFLDRM DKPQVDRIEG IPPAIAIDQI NPVRTSRSTV GTMTELNDHL KLLFARAGKL YCQGCGQGVR RDTPEGIYKE LLLHSQEQDD TPRILITFEI TVPENFSFQE VKDQLLRQGY TRFHHQHDQV LEAIQDRVRL EPSRRERIME ALETALKHGR GHVTVYPLDE HRQPQQPWRF SSDLHCPQCD IAYQDPFPSL FSFNSPLGAC GTCRGFGRTM GIDYDLVVPD ENKTLAEGAI KPWQSASYEE CQQDLMRFAR KRGIPTRLTW RELTPEQQHW VLAGEGEWEE NKWYGVQRFF DWLESKSYKM HIRVLLSKYR AYHLCPTCQG ARLKPESLLW RLGTKAGADE VLPDKRRFMP AGVRFSQRRL AALPGLTLHD VMQLSLKRCQ QFFAQLTLSA PLDEAADLLL GEIRSRLNYL VEVGLGYLTL DRQSRTLSGG EVQRINLTTA LGTSLVNTLF VLDEPSIGLH ARDLQRIIRI LQRLRDAGNS LLLVEHDSQI MLAADRILDL GPGPGERGGQ QVFFGPPQEL MQAKRSLTGQ YLTGKKRVVS ERRKTRKLPA SAYVEIRGAA EHNLKNIDVR FPLNGLVCVT GVSGSGKSTL IQEILYKGLR KLKGKPVGTP GRHQALEGHE HIQTVVLVDQ SPIGKTTRSN PISYVGALDG LRKAFAAEPL AQERGYHAGT FSFNTGKGRC PTCGGRGFEQ VEMQFLSDIY LRCPDCNGQR YRPEILEVKL QPSAQGLGKS IAEVLAMTVA EALDFFADYP EIKRGIEPLQ AVGMGYVTLG QPVPTLSGGE AQRLKLAGHL AKARGNKQGR NTLFLLDEPT TGLHFDDIAT LLQAFYRLLA EGHSLVVIEH NLEVIQAADW IIDLGPEGGE GGGKVIAMGS PQKVARSQHS HTGQALRDHA QAFDEIFQAA SAVGEAPAQY RTACGTAQTE AAPQESGAAA EGNGFIYIHN AREHNLKNID VQIPRERLTV ITGISGSGKS TVAFDILFAE GQRRYLESLN AYARQFVQPA ARPDLDAIFG IPPTVAIEQR TSRGGLKSTV ATLTEIYHFL RLLFVKLGQQ HCPDCKIPIE AQTLEAIQAR LMGDYRNRRL GILAPLIVAR KGYYTELAKW AAAKGFTHLR VDGTLLPTDP WPRLDRFKEH SIELPVGELK VTPAAEKELH ALLEQALNLG QGRVEILLPQ KKQKILYSTQ RACPSCSRSF GELDPRLFSF NSPQGWCPRC YGTGRVLPNF DGEQTGEEKE WAEKQGNPGQ ICPTCQGQRL QPEALAVRFQ ERNIAEFTGM PIAVAEATFQ SMKLQGRAAD IARDILPELR TRLKFLREVG LSYLTLDRAA PTLSGGEAQR IRLASQLGSN LRGVCYILDE PTIGLHPRDN RMLLNTLGKL EGQGNTIVVV EHDEDTIRRA EHVIDLGPGA GVNGGKVVAA GTVEALLQHP ESVTGRCLAQ PLPHPLMEKR RPETAEAHLE IRGASLHNLK SLTLRLPLRQ LVGVSGVSGS GKSTLIRQVL HGNLLRLLNR KQTAQHKETT TFQGCQEIRG WKAIQRVLEV DQTPIGKTPR SCPATYVGFW DSIRRLFADT PEARIRGYGA GRFSFNTKEG RCPECEGQGV KRIEMSFLPD VTVPCESCRG ARFTQETLMI RYKDKNIGEI LALSVDQAVE FFAAHKRIHR PLQLLQAVGL GYLSLGQPSP TLSGGEAQRI KLVTELAKAP LNPYRSANQH TLYLLDEPTI GLHMADVEKL IRVLHQLVEV GNTVIVIEHN LDIIAEVDWL IDLGPEGGDG GGQIVAQGTP ETVAKVKKNS YTAKFLTRFL KTRRAIN
|
| |