Gene BURPS1710b_A2090 details

Gene Information

• Locus tag: BURPS1710b_A2090
• Symbol: icmF3
• ID: 3692769
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: +
• Start bp: 2545077
• End bp: 2548391
• Gene Length: 3315 bp
• Protein Length: 1104 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637732344
• Product: hypothetical protein
• Protein accession: YP_337241
• Protein GI: 76818309
• COG category: [S] Function unknown
• COG ID: [COG3523] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03348] type VI secretion protein IcmF

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0127209
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCCGC GGCAGGTGAA GGTCGCGCCG AAGGCCAAGC AGCTCGATTT CGTCGACAAG 
CATCTGCGCA CCCTCGACCA GCAGTTGAAG GAGCGCTGGC GCAAGGAGCC GCGCGGCCGC 
TGGAAGCGCT GGGTCGGCGC GCTCACGCGC GAGCATCGCA CGATGCTGCC GTGGTATCTG 
GTGCTCGGCT CCGAGGGTAG CGGCAAGTCG AGCCTCGTCG CGAAGGCGGT GAGCGTGTCC 
GGCTCGCTGC AGGACCGGGT GCTCGGCTCG GACGCGACCT ACGGGCGCGG CGACGACTTG 
AACTTCCGCA TCACGCGCGA GGCGGTGTGG TTCGACGTCG GCGGCCGCTG GAGCCTGCGC 
GCGGGCGCGG ACGAGGCCGA GTTCGACGCG TGGCGCAAGC TGCTGCGCGG GATGAGGCGG 
CTGCGCAGGG GCGCGCCGAT CAGCGGCGTC GTGCTGTGCG TCGACGGCCT CGAGATGATC 
GATGCGCCGC TCGACGCGCG CAAGCGGCTG GCCGATTCGG TGCGCGCGCG GCTCGAGGAG 
ATGCGCGAGG CGTTCGGCCA GCAGGTGCAG GTGTACGTCG CGCTGAACGG GCTCGACCGG 
CTCGACGGCG CGGTCTCGAC GCTGTCGCTG CTCGAGGCGT CGAAGTGGGT CAAGGGCGTG 
GGCTTCAGCC TGCCCGACGA CGGCGCGCAC GCCGACGCCG CGCGCGCGGA CGCGAGCTGG 
CAGCACGCGC TGCAAGGGCT GCAGCAGCGG GTCCAGCAGC AGGTGCTGTA TTCGGCGCCG 
GCGGCGACCG AGGTGTCGAT GAACCACGCG CAGTTGCGCT TCGTCGAGAC GCTCAGCCGC 
CTGCAGAAGG CGCTCGTCGC GTGGCTGCAC GTCGCGCTCG CGCCGGGCGA GCCGCACACG 
GCCGCGCGGC TGCGCGGGGT GTGGCTGGGC TCGATGGCCG AGCTCGCGGA GCCGCATCCG 
GCGGGCGCGG GCGGCGTCGG CTCGGCGGAG CTGCCCGTGC CGTCGCGCCC GCTCAGCGAG 
CTGTGGACGC CGCTCATCCG GCAGGTGGCG CTCGAGCGCG ACGCGGTGCG CCCGAGCGGG 
CCGAAGTCGT GGCGCGGGCG CCTGGGCGAG GCGCTGCGCT GGGGCGCGGT GCCCCTCGTC 
GCGTTGAGCC TGCTGCTGTG GTTCGGCTGG GGCTACGTCA CCGAGCGCGA CTATCTGGAC 
GGCGTCTGGG CGCAGTTCAC CGAGGCCAAG CGGCTCGCGC AGGCCGAGGC GTCCTACGGC 
AACGACGGCG GCTCGACGCT CATCGAGATC GCGAATCAGA TGCGCTATGC GCAACTGCAG 
GCCGAGGACG CCGCGCAGGG CATGGCGACG CCGTACTTCG AGCACGGGCT CGTCGCGGAA 
ACCGCGCGCG AGACCTACTA CCGGCACTTG CAGAAGATGC TGATGCCGGA GCTGTACAAC 
GAGGTGCGGC GCACGCTCGT GTCGCAGGTC GACGGCAGCC CGGGCGACAT CTACCAGACG 
CTGAAGGTCT ACCTGATGCT CTGCCGCCCC GCGCGGCGCT CGGCGGACGA CGTCGTGCGC 
TGGCTCGACG GCCGCTGGGA CGCGCTCTCG GGCGGGCAGT ACTCGGACGA CGACCGCCGC 
TCGCTGCTCG CGCACGTGCG CACGCTGATG TCGCTGAAGG AGGTGCCGGC CACGCCGGAG 
GACGCGAATC TCGTGCGCTC GGCGCGCGCG AAAGCCGCGC AGATCCCGCT CGTCACGCGC 
GTGCTGCAGC ACATCCACGC GCAGGGGCTG CCGCAGCAGG TCAACGACAT CTCGCTGTCG 
CGCGCGGCGG GCTTCGAGGC GTCGATGAGC CTGCGCATGC GCAGCAACGT GCCGTCGACC 
GACACCGCGG TGTCGGGCTG GTTCACGCGC GCGGGCTACA CGGACGTGTT CCTGCCGCGC 
CTGCAGAAGA GCGCGCGCGC GATGCTCGAG GAGGAGAGCT GGGTGCTGCG CGACGAGACG 
CTGTCGGGCA ACAGCTTCCA GATCGACGGA CTCGTGCAGA AGCTCGCCGA TTCGGCGCGC 
AACCAGTTCC TGCAGGACTA CATCTCCGCG TGGCAGAACT TCCTGAACGA CGTGACGGTG 
CGCGGCGTGA CGGGCCTGGA CGATGCGTCG CAGCTCGCCG CGGCGATGAT GGAGGCGCAA 
TCGCCGCTCG CGAACCTGCT GCGCTTCGCC GCGCGCGAGA CGACGCTCAC GGGCGCGAGC 
GACGAAGGCA ACATCGACAG CTGGATCGAT CGCCAGAAGT ACCGCTTCGA GAAGGGGCGG 
CGGCAGGTCG TCGGCGAGCT GAGCGGGCAG CATTACCGCA CGGTGCTGCT GCCGGAGCAC 
GTGGTCGAGG AGCACTTCCA GGCGATCCGC CAGCTCGCCG CGCAACTGAA CCGCAACAAC 
ACGATCGCGA ACAACCCGCT GTCGCGGCTG TTCGAGCCGC TGTACCGGCA GCTCGGGCTC 
GTCAACGGCG CGCTGCAGGC GGGCCAGGTG CTGCCCGCGC AGTACGACGC GTTCTCGCGG 
CTGAAGGAGA CGGCCGCGCG CCAGCCGGAG CCGGTGCGCG GGATCATGCT CGACCTCGTG 
AGCAGCGGCA GCACGATGAC GACGCGCGAA TCGGGCGCGC TGCTCAACCG GGGCGCGGCG 
GGCGCGACGA AGATGGTCTG CGATCAGGGC TTCACGGGCC GCTATCCGAT GCGCCGCGGC 
GCGCAGGCGG ATGCGGGCGT GGAGGACTTC GAGCGGCTGT TCAGCGCGCA GGGGCTGATG 
GCGACGTACT TCCGCGATCA CCTCGCCGCA TATGTGGACA CATCGGCCAA GCCGTGGCAG 
GCGCTGCGCT CGAACGGCGG GCCGAACGGG ATGGTGAGCC AGTCGGTGCT GAACTCGTAC 
GAGACGGCCG AGCGCATCCG CGGCGCGATG CTCGACGATT CGGGACACCT GCGCGTGTCG 
ACCGTGCTGC GTTTCATCGA CATGGATTCG CAGTTGTCCG AAGCGCAACT GAGCGTGGCC 
GGGCAGACGG TGCGCTTCGC GCACGGCGTG ACCTCGCCGC ACCGGGTGGA CTGGACCAAC 
CAGAACACGC AGCTCGCGAT CAAGCTGCAG CTCAAATCGG TGGACGGCCG GATGACGACG 
CTGCAGTTCG ACGGGCCGTG GGCGCTGTTC CGCTTCTTCG ACGCGGGGCA GGCGGTGGGC 
GGCACGGGCA CTGCGGACCG GCGCGAGCGG CTGTATCAGA CGAGCCTCGG CACGGTGCGC 
ATCGAATGGC AGGCGCTCAC GCTGCCGTCG CCGATATGGT CGGGCATCCT GCAGTCGTTC 
AGGTGTCCGT CGTGA 

 

Protein sequence

MSPRQVKVAP KAKQLDFVDK HLRTLDQQLK ERWRKEPRGR WKRWVGALTR EHRTMLPWYL 
VLGSEGSGKS SLVAKAVSVS GSLQDRVLGS DATYGRGDDL NFRITREAVW FDVGGRWSLR 
AGADEAEFDA WRKLLRGMRR LRRGAPISGV VLCVDGLEMI DAPLDARKRL ADSVRARLEE 
MREAFGQQVQ VYVALNGLDR LDGAVSTLSL LEASKWVKGV GFSLPDDGAH ADAARADASW 
QHALQGLQQR VQQQVLYSAP AATEVSMNHA QLRFVETLSR LQKALVAWLH VALAPGEPHT 
AARLRGVWLG SMAELAEPHP AGAGGVGSAE LPVPSRPLSE LWTPLIRQVA LERDAVRPSG 
PKSWRGRLGE ALRWGAVPLV ALSLLLWFGW GYVTERDYLD GVWAQFTEAK RLAQAEASYG 
NDGGSTLIEI ANQMRYAQLQ AEDAAQGMAT PYFEHGLVAE TARETYYRHL QKMLMPELYN 
EVRRTLVSQV DGSPGDIYQT LKVYLMLCRP ARRSADDVVR WLDGRWDALS GGQYSDDDRR 
SLLAHVRTLM SLKEVPATPE DANLVRSARA KAAQIPLVTR VLQHIHAQGL PQQVNDISLS 
RAAGFEASMS LRMRSNVPST DTAVSGWFTR AGYTDVFLPR LQKSARAMLE EESWVLRDET 
LSGNSFQIDG LVQKLADSAR NQFLQDYISA WQNFLNDVTV RGVTGLDDAS QLAAAMMEAQ 
SPLANLLRFA ARETTLTGAS DEGNIDSWID RQKYRFEKGR RQVVGELSGQ HYRTVLLPEH 
VVEEHFQAIR QLAAQLNRNN TIANNPLSRL FEPLYRQLGL VNGALQAGQV LPAQYDAFSR 
LKETAARQPE PVRGIMLDLV SSGSTMTTRE SGALLNRGAA GATKMVCDQG FTGRYPMRRG 
AQADAGVEDF ERLFSAQGLM ATYFRDHLAA YVDTSAKPWQ ALRSNGGPNG MVSQSVLNSY 
ETAERIRGAM LDDSGHLRVS TVLRFIDMDS QLSEAQLSVA GQTVRFAHGV TSPHRVDWTN 
QNTQLAIKLQ LKSVDGRMTT LQFDGPWALF RFFDAGQAVG GTGTADRRER LYQTSLGTVR 
IEWQALTLPS PIWSGILQSF RCPS