| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A1689 |
|---|
| Symbol | sciS |
|---|
| ID | 3694536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 2059856 |
|---|
| End bp | 2063932 |
|---|
| Gene Length | 4077 bp |
|---|
| Protein Length | 1358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637731943 |
|---|
| Product | SciS protein |
|---|
| Protein accession | YP_336846 |
|---|
| Protein GI | 76818042 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.79205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGT TCCTGTCCTT TCTGGTGTCT CGATCGTTCA TCGCGTTCGT CGCGCTGCTC
GCCGTCGCGC TCGTCATCTG GTTCGTCGGC CCGTTCGTCG CGTTCGGCGG GCTCACGCCG
CTCGCGGGCG CGGGCATGCG CGTCCTCGCG ATCGCGCTGC TGCTGGCGGG CGTGCTGCTG
TGGCTCGCGG GCCGGCCGAC GAGCATCGTG TTCGTCGCGC TGCTGTGCGT GCTGATCTGG
CATGCGTCGC CGCTGCTCGC GTTCGGCGGC GCGACGCCGT TCGCGGCGGA GGCGGTCCGG
GCGATCGCGA TCGCGCTCGT GCTCGCGGCG TTCGCGCTGC ACCTTGCGTT CCGGCTGCTG
CAAAAGGCTC GCACCGATCC GGATTTTCTG AAGAGCCTGC TCGAATTCGG CGGCAAGCAG
CCCGAATCGC CCGCGGCCGG CCGCCTGGTG GCGGTCAACG CCGCGATCGC CGGCGCGATC
GCGCGCCTGA AAGGCATGCG CAGCGGCGCG CGCGGCCTGC GCCGCCTGTT GCGCGGCAAG
CGCTATCTGT ACGAACTGCC GTGGTACGTC ACGCTCGGCT CGCGGGCATG CGGCAAGACG
AGCGCGCTCC TGAACGCCGG GCTCTCGTTT CCGGTCGCGG CGCAAATGCC GCGCGCGGCA
GCCGGGCTGC CGGATCACGG CGGCTCGGTC GACTGGTGGT TGACCAACGA TGCGGTGCTG
ATCGACACGG CCGGCCATTA CACGCGTCAC GGCACGTCGG CGCACGCGGC GCCGCTGCCG
CCCGCCGGGC CCGCGCCGCA CGCCCAGCCC TTCGACGCGG CCGCCGACGC GCGCCGCGCG
AACGGTCAGC CGGCGGGCGA GCGGCACGCC GTCGCGATGG CCGCGGCGGC GCCGTCGAGC
GCCGCGTTCG TCGACGAGCG GCAGGCGCAA TGGCGGCAGA CCGTCGACCA GGCCGAATGG
CTGGGCTTTC TGCGGACGCT GCGCAAGCAT CGGCCGCGCG AGCCGATCAA CGGCGCGCTG
CTCGCCGTCG ACGTCGCCAC GCTCACGAGC GCCGACGACA ATGCGCGCCA TGCCGAGGCA
GCCGCGCTGC GCGCGCGGCT CGCCGATCTG CGCGCGCAAC TGGGCGTGCG CTTTCCCGTC
TATCTGATCG TCACGAAGAC GGACCAGTTG CCGGGCTTCG CCGAATACTT CAGCGCGCTG
ACCACGGAGG GCCGCGCGCA GACGTGGGGG TTCACGCTGC CGTACGACAA GGAGACCATC
GCGGACGAAG GCGTCCACGC GCGCTGCGCC GACGAGCTGC GCGCGTTGGC CGCGCGGCTC
GCCGCGGGCG TGAACACCCG CCTGCAGGAA GAGCACGACA CGCAGCGGCG CCGCCGGCTC
GCCGCGCTGC CGGAGGAATT TCTCGTGCTG ACACGCCCGC TCGGCGAGCT GATCGATCGC
GTCTTCACCG ATTCCCGCTA CGACGACACG CAGCATCACG CGACGCTGCG CGGCGTGTAT
TTCACGAGCG CCGCGCAGAC GGGCGGCGAG GCCGCCGCCG AAACGCGCAC CGTCGCGCGA
CGCCTCGCCG CCGCGACGGG CCGCGCGCCG GCCGCGGCCG CGCGCGCGGC GCAGCAGGAA
ACCAGCCAGA GCTTCTTCCT GCACGATCTG CTGACGAAGA TCGTCATTCC GGACGCACGC
CTCGTCCAGC CGAACCTTCG CTGGGAGTAT CGCTCGCGCA CGCTGAGCCT CGCCGCTCAC
GCGCTCGCGC TGCTGCTGTT CGCGTGGGTC GCGATCGGCC TGCGCGTCAG CATGGGCAAC
AACGATGCCT ATCTCGACGC GCTCGCGCGC AAGACGGCGG CGCTCGCCTC CCGGGTCGAC
CAGTTGTACA AGGCGCCGAA GCCCGAGGCC GTGCCCGACG TGCTGACGCA AGCCCGCTCG
CTGAGCGCGT ACCCGGGCCT CGATCTGTCC GCGCCGGGCA GCGGCTGGCG GTTCGGCCTG
TACACGCCGC CCGGCATCGT CGCCGAAAGC AGCCGCACGT ACGACGCGCT CGAGGACACC
CTGCTGCTGC CGCGGATCGT CACGCGCATC GAGGCGGTGC TGTCGCAGGC GATCGCCGAT
CGCGATCCGA AGGCCGCGTA CGACGCGCTG CGCGTCTATC TGATGCTGTA CGACCGGGCC
CGCTTCGATG CCGCGCAGGT CGAGGCGTGG GTGCTCGACG ACTGGGCGCG AACCGACAGC
GCGGCGGTCT TCGGCGGCCG CGCGTCGATG ATCGCGCACG TCGAGCAACT GTTCCGCGGC
GAGCGCATCG TGCAATCCCC GCTGATCCGC AACGATGCGC TGATCCGCCA GGCGCGCGCG
TTCCTGGACG GCAGCAACGC GACCGAGCGG CTCTACGAGC GCGCGAAGGC GGCGATGAAT
AAAGAAGCGC CCGACGAGTT CACGCTGCTG CGGGCCGTCG GCCCGCAGGC CGGCACGGTG
TTCACGCGCG CGAGCGGCGC GCCGCTCGCG CGGGGCGTGC CGGGCCTCTT CACGTTCGAC
GGATACCGGC GCGTGTTCGA CAAGCGGCTC GCCGAATTCG TGCGGACCGC GCGCGAAGAC
GATGCATGGG TGATGGGCCG CGCGTATCTC GGCGACGCTC AAAAAAAAAC GGCTGAGATC
GCGAATGCGC TCGCGGGGGC CGACGATCCG CTGACCGACG CGATCCGCCG GCAATATCTG
ATCGAATACG CGCAGCAATG GGACGCGTTT CTCGGCGACA TCCGCACGAT CGGCGGCACG
AGCCTCGCAT TCGATCTCGT GGTGCTGCGC AGCTTCGCGG CGCCGGATTC GCCGCTCGAG
CGGCTCGCGC GCGCGGCGGT TCACGAGACG ACGCTCGCGC AGCCCGAAGC GAGCGCCGAT
CGCTCGTTCC TGCAAAAGGC GTCCGCCCAG TTGAGCCAGC AGGCGGACAA GGCGCTCGGC
GTGCGCGCGC AGGAGCGCGT CGAGCGCGAG CTCGTCGACA ATCGCTTCGC GGGCCTGCGC
GAAATGGTGA CGGGCCGCGC GGACACGCAA ACGGACGCGC GCCCGGGCGC GCCGGCCGGC
AAGAGCGGGC TCGATGCGGT CGCGAACCTG CTGAACGACT ACTACACGGC GCTGACCGTC
TCGGACGACG CGCTCGCGAA CAACAGCATG CCGCCCGCGA ACGATACCGC GGCGAAACTG
AAGATGGCCG CGCAGACGAT GCCCGCGCCG TTTCGCTCGG TGCTGACCGG GCTCGCCGCG
CAGGGCTCGC GCGAAGTGAA CCGCGGCATC GGCCAGTTGC TGTCGCGGCA GTTGCAGGCG
ACGGTAGGCG ACGTTTGCCG CCTCGCGATC GAGGGCAACT ATCCGTTCGC GCCCGACAGC
AAGCGCGACG TCGGCATCGA GGACTTCACG CGCGTGTTCG CGCAAGGCGG CGTGATCGAC
GACTTCTTCG CGAAGACGCT CGCGCCGTTC GTCGACACGT CGACGCGGCC TTGGCGCTAC
AAGACGCTGC CCGGCGCGAC CGAACCGGTG GAGGGCCCCG ATCTCGAACC GTTTCAGCAC
GCGAAGGCGA TTCGCGAAGT GTTTTTCGGC GCGCCCGGCC AGAAGCAGAT GGCGTGGAAG
GCCGACATCC GGATTCCCGA ACTGGACCCG ACGATCACGA GCCTCGCGAT CGACGTCGAC
GGACAGACGG CGCTCTATCA GCACGGCCCC GTCGCGCCGT TCGCGGTGAG CTGGCCGGGG
CCGCGCGGCG GCGTGCACGC GGAGATCACC GCGAGCCCGC GCATCCGGCC GGACACGTCG
GCGGTGTCGA CGGACGGCCC ATGGGCGCTG CTGCGCCTGC TTCAGAAGGG ACGCGTGAGC
GGCACGGCGA CGCCCGGGCG CACGCGCGTC ACGCTCGACT TCGACGGCCG CAAGGCGGTG
CTCGACCTCG CGAGCACGGG CAGCGTCGCG AATCCGCTGA CGAGCGACGT GCTGAAGACG
TTCCGGTGCC CGGGCTCGAT GCCGATGTTC AGTCTCGCGG ACACCGGCGC GCCGCCGGGC
TTGCCGCCCG GGAGCCCGGC GGCGCCGACG TCGCGCGTCG CGCGCGACGG GCGGTGA
|
|---|
| Protein sequence | MNKFLSFLVS RSFIAFVALL AVALVIWFVG PFVAFGGLTP LAGAGMRVLA IALLLAGVLL
WLAGRPTSIV FVALLCVLIW HASPLLAFGG ATPFAAEAVR AIAIALVLAA FALHLAFRLL
QKARTDPDFL KSLLEFGGKQ PESPAAGRLV AVNAAIAGAI ARLKGMRSGA RGLRRLLRGK
RYLYELPWYV TLGSRACGKT SALLNAGLSF PVAAQMPRAA AGLPDHGGSV DWWLTNDAVL
IDTAGHYTRH GTSAHAAPLP PAGPAPHAQP FDAAADARRA NGQPAGERHA VAMAAAAPSS
AAFVDERQAQ WRQTVDQAEW LGFLRTLRKH RPREPINGAL LAVDVATLTS ADDNARHAEA
AALRARLADL RAQLGVRFPV YLIVTKTDQL PGFAEYFSAL TTEGRAQTWG FTLPYDKETI
ADEGVHARCA DELRALAARL AAGVNTRLQE EHDTQRRRRL AALPEEFLVL TRPLGELIDR
VFTDSRYDDT QHHATLRGVY FTSAAQTGGE AAAETRTVAR RLAAATGRAP AAAARAAQQE
TSQSFFLHDL LTKIVIPDAR LVQPNLRWEY RSRTLSLAAH ALALLLFAWV AIGLRVSMGN
NDAYLDALAR KTAALASRVD QLYKAPKPEA VPDVLTQARS LSAYPGLDLS APGSGWRFGL
YTPPGIVAES SRTYDALEDT LLLPRIVTRI EAVLSQAIAD RDPKAAYDAL RVYLMLYDRA
RFDAAQVEAW VLDDWARTDS AAVFGGRASM IAHVEQLFRG ERIVQSPLIR NDALIRQARA
FLDGSNATER LYERAKAAMN KEAPDEFTLL RAVGPQAGTV FTRASGAPLA RGVPGLFTFD
GYRRVFDKRL AEFVRTARED DAWVMGRAYL GDAQKKTAEI ANALAGADDP LTDAIRRQYL
IEYAQQWDAF LGDIRTIGGT SLAFDLVVLR SFAAPDSPLE RLARAAVHET TLAQPEASAD
RSFLQKASAQ LSQQADKALG VRAQERVERE LVDNRFAGLR EMVTGRADTQ TDARPGAPAG
KSGLDAVANL LNDYYTALTV SDDALANNSM PPANDTAAKL KMAAQTMPAP FRSVLTGLAA
QGSREVNRGI GQLLSRQLQA TVGDVCRLAI EGNYPFAPDS KRDVGIEDFT RVFAQGGVID
DFFAKTLAPF VDTSTRPWRY KTLPGATEPV EGPDLEPFQH AKAIREVFFG APGQKQMAWK
ADIRIPELDP TITSLAIDVD GQTALYQHGP VAPFAVSWPG PRGGVHAEIT ASPRIRPDTS
AVSTDGPWAL LRLLQKGRVS GTATPGRTRV TLDFDGRKAV LDLASTGSVA NPLTSDVLKT
FRCPGSMPMF SLADTGAPPG LPPGSPAAPT SRVARDGR
|
|---|
| |