Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_A1610 |
Symbol | sciS |
ID | 3692477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007435 |
Strand | + |
Start bp | 1962287 |
End bp | 1966195 |
Gene Length | 3909 bp |
Protein Length | 1302 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637731864 |
Product | SciS protein |
Protein accession | YP_336767 |
Protein GI | 76818330 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.17347 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTACC TGAAACGCTT CTTGAGATTC GTCTTTTCGT GGCAGATGCT CGCATGCATC GCGGTGCTGC TTGTTTGCGC CGCCGTATGG TTCGTCGGCC CCCTGCTCGC GTTCGACGAG TTGCGGCCGC TCGCGGGCGT CGTCGTGCGG GTCGCCGTCA TCGTCCTTCT CGTGGCGCTC CTTGCGTTCT GGCTGTTGCG CTGGCCGCTC AGCCCGATCG GCGTCGCCGC ACTGTGTCTG CTGATCTGGC ACGCGGGGCC GCTCTTCGCG TTCGGCGATC ACCGCCCGTT CGGGCCCGCG TGGGTCCGCG TGCTGATCGT CGCCGCGATG CTCTTCTGCT ACGCCGTGTA TGGTCTCTAT CGCCTGTGGC AGGCGGTTCG GACGAACGAC GCATTGCTCA AGCGCATTCT CGAGCCGTCG GCGGGCAAGC CGGACGCGGC GGCCCAGGCG AACATCCGTG CGGTGAGCGT GGCGGTGTCG AAGGCGATCG GTCAACTGAA GCGCTTGCGC GGCGGTGCGT TCGGCTGGCG GCGCTTGCTC GAAAGCGGGC GCTACCTGTA TGAACTGCCG TGGTACATGG TGGTCGGCGC GCCTGGTGCG GGCAAGAGCG CGGCGATCGC GCGTTCCGGC CTGAAGTTTC CGCTCGCGGA TCAGATGGAG GCATCGTCCG AGCGCGCGCG GGGCGGCACG GCCAATTGCG AATGGTGGTT CGCCAACGAG GCCGTGTTGA TCGACACGGC GGGCCGTTAC GTGCGGCACG AGGTGCCCGG CGACGAAGAG GCGACAGTTG CCAACGGGGC GGAGTGGAAG GGCTTTCTCG GTCTGCTTCG CAAACATCGG CCGCGCGCGC CGGTCAATGG CGTGGTCCTG TCGGTCAGCG TCGAGGAGCT CGTCGGGCGC ACGCCGGCCG AGCGCACCGC GCACGCAGCC ACGCTGCGCG CCCGCCTGGG CGAGTTGCAT CAGGAACTGG GCATTCATTT CCCGGTATAC GTGATCGTCA CGAAACTCGA TTTGCTGCCC GGCTTTCCGG AGTATTTCCA GTCGTTGACG GCCGAAGGGC GGACGCAGAT CTGGGGATTC ACGCTGCCCT ACGACGCGGA GAACAGGCGG AGCGCGGTCG GCGCGCTGCG CGAGCATTGC GCCGACGAGC TGAAGCGGCT GGAGATGCGT ATCGACGCGG GGCTGAACAA CCGTCTGCTC GAAGAGTACG AAAACGATCG CCGCAAGCGG CTGTATGCGT TGCCGCAGGA GTTCCGGAGC CTGTCGGCCG CGCTGTCGGA CATGCTCGCC CTCGTGTTTC TCGATTCACG CTACGACGAC GCCCAGTTGC AGAACACGCT GCGCGGCGTC TACTTCACGA GCGCCGAGCA GACGGATCAG GTATTGGCCG CGGATCGCGA AACCATCCTG CAGCGCTTGA AGCGCCAACT CGGCAGAATG CTCGGCGGCG ATGCCGGCGC GCAGACGCGT GACAGCGGCG CGGTGTCGGG CAGCCGCGGC TACTTCCTGC GCGATGTGTT CCAGCATGTG ATCGTGCCGG AGGCGCATCT GGTTCGGCCG AACGTCAGGT GGGAGGTGCG TTTTCGCCTG ATGCGCTGGG CCGGGCATCT GCTCGCCGTC GCATTGCTGG TCTGGCTGGC GAGCGCGCTG ACGGTGAGCT TCGACAACAA TCGCGGTTAC CTGGACGCGA TCTCGGAAAA GACAGCCGCG CTCGCCGCAC GAGTCAACGC GTACAACAAG GCGCCGAAGC CGGCGCAGAT CGGGGGCGTA CTGGATGGCG CGCGCGATCT TCCTCAGCAT GGCAATCTCG ATCTCGACGC GCCCGGCGCG AGCTTCCGCT ACGGCCTGTA TGTCGCACCC GGCATCGTCG ACGCGTCCGA CGCGACTTAT CGGAGCCTGC TGCGCCGGAG CCTTCTGCCG CAGATCGTGC GGCGCGTCGA GAATGCACTG AGCGCGCAAA TCGATGCGAA GCATGCGGAC GAGGTCTATC GCACGCTGAC GGTCTACTTG ATGCTCGACG ACGCCGCGCG CCATGACGCG AAGGCGGTGA AAGACTGGGT CATGCGCGAC TGGGAGCGCT CGGATAGCGC GGCCGAGATG GGGGGGCGCA ATTTGATGGC GCGGCACCTG GACGCGCTGT TCGTCGATGC TCGGCCTTTC GAGCCGAGCG GGCACCGGAA CGCCGCACTC GTTCAGCGCG CCCGGCTTTT CCTCAACGCG AACCCGGCCC CGAGGCGGCT GTACGAGCGT GCGATGGCCG CGATCGAGAA GGAGGCGCCG GAGAACTTCA CGCTCGCGCG TGCGGTCGGG CTTCAGGGCG CGGGCATCTT TCGGCTCGCC GACGGCTCGC GGTTTCAACG CGGGATGCCC GGCTTGTATA CGTACGATGG CTACCACCAG GTATTCAGCG TCCGGTTGCC CGAATTTCTC GCCCGTGCGC AAAGCGACGA CGCATGGGTG ATGGGGAACG CCGGCCCCGC CGCGCGATGG GGCGACGCGA TTCGGAACAC GCAGGCCGTT GCGGGTCGGT CTTCGCTTGC CGACGACATT CGTCGCCAGT ACCTGACGGA TTACGGCAAC TATTGGCAAC AGTATCTGGC GGACATTCGG CCCGCGTCGT CCGGAGAGGA CGGCGCGGGC GGCACGCTCG CATTCGATCT CGCGACGCTG CGCGCGCTCG CCGCCCCCGA TTCACCGCTC GTGAGACTGG CGCGCGCCGT CGTTCGCGAA ACATCGCTGT CGGTCGTCGA CGCACGGGAA GACGCGTCGT TGACCGACGC CGCGCTTTCG GCGCTCGGGC GACGATCCGG CGCGGCGAAG GAGGTTGCCG ACGGCGCGCA GAAACTGGCG GCGCGGCGGC CGGAGCAGCG CCTCGAGAAG GAAGTGGTGG ACAACCGCTT CGCGGCGCTG CGCGAGGTGG TGACGGGGCA GGCCGACACG GGAAGCGGGC CGGCGATGAC GGACGTGCCG GTCGCGGCGG GGGGCCGGGC GCTGCAGCTC GATGCGATCC TCACGCTGAT CAACGAACAG TACACGCGCC TCGTCGTTGC CGACAACGCG CTCTCGTCGC AGAGCATGCC GCCCGCGCTG GACATCGGCA CCACCTTGCA AATGGAGGCG GAGAAACTGC CCGCGCCGCT GCGCACGGTG CTGGGCGGCA TCGCGACGCA AGCCGCCGAC AAAGTCGGGC GCGAAGTGGG TTCGCTGCTC GCGATGCAGG TGGACTCGAG TGTCGGCAAC GCGTGTCGCG CCGCCGTCGA CGGCAAGTAT CCGTTCGCGC GCAGCGCGCA GGAAGTCGAC ATCGAGGATT TCAACCGCCT CTTCGCCGCG GGCGGCCTGT TCGACGCGTT TTTTCAGAAG GCGCTCGCGC CGCATGTCGA CACCCATTCG AAGCCGTGGC GTTACAAGGC GTTGAATCCC GGCATGCCGC CGATCCGGGG GCCGAGCCTC GAGCCGTTCG AGCGCGCCGC CGCGATTCGC GACGTGTTCT TTCGTGAACC GGGCGCAAAG CGGATGGCGT GGAAGATGGA TGCGAAGGTG GCGTCGATCG ACCCTGAGAT CACCGAGCTC ATCGTCGACG TCGACGGCCA GTCGCAGCGC TATGTCCACG GCCCCGTGCT GCCGTTCTCC GTGAACTGGC CCGGGCCGCG CGGCGGCGCG ATCGCCGAGA TCACCGCGAA GCCGCGGATT CGTCCCGATA CGTCGACGAT CGCGACGACG GGGCCCTGGG CGCTGTTTCG GCTGATCGAG CGCGGGCGGT TGACGGGCAC CACGTCGGCG AGCCGGTTGA TGCTGGATTT CGATTTCGAC GGTCGGCACG CGGCCCTGGA GCTCAGGACG AACGGCCAGA TGAATCCGTT GACGAGCGGC TTGCTGACGC ATTTTCGCTG TCCGGGGAGC GTCGGTTGA
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Protein sequence | MSYLKRFLRF VFSWQMLACI AVLLVCAAVW FVGPLLAFDE LRPLAGVVVR VAVIVLLVAL LAFWLLRWPL SPIGVAALCL LIWHAGPLFA FGDHRPFGPA WVRVLIVAAM LFCYAVYGLY RLWQAVRTND ALLKRILEPS AGKPDAAAQA NIRAVSVAVS KAIGQLKRLR GGAFGWRRLL ESGRYLYELP WYMVVGAPGA GKSAAIARSG LKFPLADQME ASSERARGGT ANCEWWFANE AVLIDTAGRY VRHEVPGDEE ATVANGAEWK GFLGLLRKHR PRAPVNGVVL SVSVEELVGR TPAERTAHAA TLRARLGELH QELGIHFPVY VIVTKLDLLP GFPEYFQSLT AEGRTQIWGF TLPYDAENRR SAVGALREHC ADELKRLEMR IDAGLNNRLL EEYENDRRKR LYALPQEFRS LSAALSDMLA LVFLDSRYDD AQLQNTLRGV YFTSAEQTDQ VLAADRETIL QRLKRQLGRM LGGDAGAQTR DSGAVSGSRG YFLRDVFQHV IVPEAHLVRP NVRWEVRFRL MRWAGHLLAV ALLVWLASAL TVSFDNNRGY LDAISEKTAA LAARVNAYNK APKPAQIGGV LDGARDLPQH GNLDLDAPGA SFRYGLYVAP GIVDASDATY RSLLRRSLLP QIVRRVENAL SAQIDAKHAD EVYRTLTVYL MLDDAARHDA KAVKDWVMRD WERSDSAAEM GGRNLMARHL DALFVDARPF EPSGHRNAAL VQRARLFLNA NPAPRRLYER AMAAIEKEAP ENFTLARAVG LQGAGIFRLA DGSRFQRGMP GLYTYDGYHQ VFSVRLPEFL ARAQSDDAWV MGNAGPAARW GDAIRNTQAV AGRSSLADDI RRQYLTDYGN YWQQYLADIR PASSGEDGAG GTLAFDLATL RALAAPDSPL VRLARAVVRE TSLSVVDARE DASLTDAALS ALGRRSGAAK EVADGAQKLA ARRPEQRLEK EVVDNRFAAL REVVTGQADT GSGPAMTDVP VAAGGRALQL DAILTLINEQ YTRLVVADNA LSSQSMPPAL DIGTTLQMEA EKLPAPLRTV LGGIATQAAD KVGREVGSLL AMQVDSSVGN ACRAAVDGKY PFARSAQEVD IEDFNRLFAA GGLFDAFFQK ALAPHVDTHS KPWRYKALNP GMPPIRGPSL EPFERAAAIR DVFFREPGAK RMAWKMDAKV ASIDPEITEL IVDVDGQSQR YVHGPVLPFS VNWPGPRGGA IAEITAKPRI RPDTSTIATT GPWALFRLIE RGRLTGTTSA SRLMLDFDFD GRHAALELRT NGQMNPLTSG LLTHFRCPGS VG
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