| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0080 |
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| Symbol | oprB |
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| ID | 3692809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007435 |
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| Strand | + |
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| Start bp | 108412 |
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| End bp | 110067 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637730334 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_335239 |
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| Protein GI | 76818680 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGCT TTCCTCACGA TACGGCGGCG GCCTCGCGCC GTTGCCGCCG CCGCGCGGGC
GGCGCCGCGC GCGCTTCGTG CGCTTCGTGC GCCGCTTCGC GCGTCGCGTG CGCGTCGCTC
GTGCGCACGG CGGTTCGCGC CGCCGCCGTC GCGGCCGCCT TCTTCGCCGC GGGCTGCACG
CTCGCGCCGC GCTACGAGCG TCCGGCCGCG CCGGTGTCGG GCGCGTTCCC CGCCGACGGC
GTCTACGCCG CGCAGCCGGG CGCCGCGCCC GGCGCGCGCA GCGCGAACGG CCAGGCGGCC
GTCGATATCG GCTGGCGCGA GTTCTTCGTC GATCCGCGCC TGCAGCGGCT GATCGAGATC
GCGCTGAAGA ACAACCGCGA CCTGCGCGTG TCGGTGCTCA ACGTCGAGGC GTCGCGCGCG
CAGTATCAGA TCACGCGCGC GGGGCTCTTC CCGACGTTGA GCGGCACCGG CACGGGCACG
ATCCAGCGCA CGCCGGCCGG CGTGTCGATC ACCGGCCAGC CGCTCATCTC GCGGACCTAC
AACGTCGGCG TCTCCGCGTC GTGGGAGCTC GACCTGTTCG GCCGCGTGCA GAGCCTGAAG
GACCAGGCGC TCGCGCAATA CTTCGCGACC GCGCAGGCGC GCAAGGCCGC GGAGATCTCG
CTCGTCGCGA GCGTCGCCGA TCAGTACCTG ACGCTGCTGT CGACCGACGA TCTGCTGCAG
GTCACGCAGA ACACGCTGAA GTCGGCGCGC GCGTCCTACG ATCTGACGAA GCTGCAGTTC
GACAACGGCA CCGGCTCGGA GCTCGACCTG CGCCAGGCGC AGACGGTGGT CGAGACCGCG
CTCGCGAGCC AGCAGGCGCA GGCGCGCGCC CGCGCGCAGG CGCTCAACGC GCTCGTGCTG
CTGATCGGCG AGCCGCTGCC CGACGATCTG CCGGCCGGCC TGCCGCTCAA TGCGCAGAAC
CTGCTCACCG ACATTCCGGC CGGGCTGCCG TCCGATCTGC TCACGCGGCG GCCCGACATC
ATGCAGGCCG AGGAGACGCT GCGCGCGGCG AACGCGAACA TCGGCGCGGC GCGCGCGGCG
TTCTTCCCGA AGATCTCGCT CACCAGCGCG TTCGGCACCG CGAGCCCGAC GCTCGGCGGC
CTGTTCAAGG CGGGCACGGC GGCGTGGTCG TTCGCGCCGA ACATCGCGCT GCCGATCTTC
GAGGGCGGGC AGAACATCGC GAACCTCGAT CTCGCGCACG TGCAGAAGCG CATCGAGATC
GCGAACTACG AGAAGGCGAT CCAGAGCGCG TTTCGCGAGG TGTCGGACGG GCTTGCCGCG
CGCGGCACGT ACGATCAGCA GATCGCGGCG CTCGAGCGCA ACGAGCACGC GCAGCAGCGC
CGCTACGATC TGTCGGACCT GCGCTACAGG AACGGCGTCG ACAGCTATCT GTCGGTGCTG
ACCGCGCAGA CGGACCTGTA TTCGGCGCAG CAGCAGTTGA TCAGCGCGCG GCTCGCGCGC
TGGACGAACC TCGTGGACCT GTATCGCGCG CTGGGCGGCG GGTGGCTCGA GCGCGCGGGC
GAGACGCCGC GCCCGGCGGA CGCGCCCGTC GATTACGGCA AGGCGGCGCC CGCGCCGGCG
TCGGCATCGG CGCGAACAGC GGCCGTGACT GGTTGA
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| Protein sequence | MDRFPHDTAA ASRRCRRRAG GAARASCASC AASRVACASL VRTAVRAAAV AAAFFAAGCT
LAPRYERPAA PVSGAFPADG VYAAQPGAAP GARSANGQAA VDIGWREFFV DPRLQRLIEI
ALKNNRDLRV SVLNVEASRA QYQITRAGLF PTLSGTGTGT IQRTPAGVSI TGQPLISRTY
NVGVSASWEL DLFGRVQSLK DQALAQYFAT AQARKAAEIS LVASVADQYL TLLSTDDLLQ
VTQNTLKSAR ASYDLTKLQF DNGTGSELDL RQAQTVVETA LASQQAQARA RAQALNALVL
LIGEPLPDDL PAGLPLNAQN LLTDIPAGLP SDLLTRRPDI MQAEETLRAA NANIGAARAA
FFPKISLTSA FGTASPTLGG LFKAGTAAWS FAPNIALPIF EGGQNIANLD LAHVQKRIEI
ANYEKAIQSA FREVSDGLAA RGTYDQQIAA LERNEHAQQR RYDLSDLRYR NGVDSYLSVL
TAQTDLYSAQ QQLISARLAR WTNLVDLYRA LGGGWLERAG ETPRPADAPV DYGKAAPAPA
SASARTAAVT G
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