Gene BURPS1710b_A0014 details

Gene Information

• Locus tag: BURPS1710b_A0014
• Symbol: ecfR
• ID: 3692265
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: +
• Start bp: 36193
• End bp: 36714
• Gene Length: 522 bp
• Protein Length: 173 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637730269
• Product: ECF subfamily RNA polymerase sigma factor
• Protein accession: YP_335174
• Protein GI: 76819714
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.503189
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCTTCG AATCGGACGT CGTCGGCTGG CTGCCGCAGT TGCGCCGCTA TGCGCGCGCG 
CTGACGGGCG ACCCCGCGTG GGCCGACGAT CTCGTACAGG ACACCGTCGA GCGCGCGTTC 
TCGCGCATGC GCGCGTTCCG TCCCGACAGC AATCTGCGCG CGTGGCTGTT GACGATCCTG 
CGCCATCTGT ACATCGATCA GTTGCGCGCG CGCCGCGAAT TCGCCGTCGA CGACGACGAA 
GGCCCGTGGC GCACGCTCGA GGCGCCCGCC GGCCAGATCG ACGCGCTCGT GCTGCGCGAC 
GTGCAGCGAA TGCTGTACCG GCTGCCGCTC GAGCAGCGCG AAGTGCTGCT GCTCGTCTGC 
GTCGAAGAGT TGAGCTATCA GGACGCGTCG GCGGTGCTCG GCGTGCCGGT CGGCACCGTG 
ATGTCGCGGC TGTCGCGCGC GCGGGAGCGC ATGCGCGCGC TGCTGACCGA CGCGCCGCTG 
CGGCCGCCGC TGTCCCTTAC CGCTGCGAGA CATCATCGAT GA 

 

Protein sequence

MSFESDVVGW LPQLRRYARA LTGDPAWADD LVQDTVERAF SRMRAFRPDS NLRAWLLTIL 
RHLYIDQLRA RREFAVDDDE GPWRTLEAPA GQIDALVLRD VQRMLYRLPL EQREVLLLVC 
VEELSYQDAS AVLGVPVGTV MSRLSRARER MRALLTDAPL RPPLSLTAAR HHR