Gene BURPS1710b_2588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS1710b_2588 
SymbolligA 
ID3690138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 1710b 
KingdomBacteria 
Replicon accessionNC_007434 
Strand
Start bp2866551 
End bp2868626 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content68% 
IMG OID637729044 
ProductDNA ligase, NAD-dependent 
Protein accessionYP_333980 
Protein GI76810783 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.245296 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCGAT CCCCAGTTGA ACCGCCCGCC AGCCAGCCGG CGAAGCGCGC CGCGTGGCTG 
CGCGCCGAGC TCGAGCGGGC GAACTACGCG TATTACGTGC TCGACCAGCC GGACCTGCCC
GACGCCGAGT ACGATCGCCT CTTCGTCGAA CTCCAACGGA TCGAGGCCGA GCACCCCGAT
CTCGTCACGC CCGATTCGCC GACGCAGCGC GTCGGCGGCG AGGCCGCGAG CGGCTTCACG
CCGGTCGTCC ACGACAAGCC GATGCTCTCG CTCAACAACG GCTTTGCCGA CGAGGACGTC
ATCGCGTTCG ACAAGCGCGT CGCCGACGGC CTCGACAAGG CGACCGACCT CGCCGGCACC
GTGACCGAGC CCGTCGAATA CGCGTGCGAG CTGAAGTTCG ACGGCCTCGC GATCTCGCTG
CGCTACGAGA ACGGCCGCTT CGTGCAGGCG TCGACGCGCG GCGACGGCAC GACGGGCGAA
GACGTCACCG AGAATATCCG CACGATCCGT GCGATTCCGC TGACGCTCAA GGGCAAGCGG
ATACCGCGCA TGCTCGACGT GCGCGGCGAG GTGCTGATGT TCAAGCGCGA TTTCGCGCGG
CTGAACGAGC GCCAGCGCGC GGCGGGCCAG CGCGAGTTCG CCAATCCGCG CAACGCGGCG
GCGGGCAGCC TGCGACAGCT CGATTCGAAG ATCACCGCGT CGCGGCCGCT TTCGTTTTTC
GCATACGGAA TCGGCGTGCT CGACGGCGCC GACATGCCCG ACACGCACAG CGGCCTGCTC
GACTGGTACG AGACGCTCGG GTTGCCCGTG AACCGGGAGC GCGCGGTCGT GCGCGGCGCG
GCGGGCCTGC TCGCGTTCTT CCATTCGGTG GGCGAGCGGC GCGAATCGTT GCCGTACGAC
ATCGACGGCG TCGTCTACAA GGTGAACCGC CGCGACGAGC AGGATCGGCT CGGCTTCGTG
TCGCGCGCGC CGCGCTTCGC GCTCGCGCAC AAGTTCCCCG CGCAGGAGGC GCTCACGAAG
CTCATCGCGA TCGACGTGCA GGTCGGCCGC ACCGGCGCGA TCACGCCGGT CGCGCGCCTC
GAGCCCGTGT TCGTCGGCGG CGCGACCGTC ACGAACGCGA CGCTGCACAA CGAGGACGAG
GTGCGCCGCA AGGACATCCG CATCGGCGAC ACGGTCATCG TGCGCCGCGC GGGCGACGTG
ATTCCCGAAG TGGTGTCGGC CGTGCTCGAC CGGCGTCCCG CCGACGCGCA GGAGTTCGTG
ATGCCGACCG AATGCCCGGA ATGCGGATCG CGGATCGAGC GATTGCCCGA CGAGGCGATC
GCGCGCTGCA CGGGCGGGCT GTTTTGCCCC GCGCAGCGCA AGCAGGCGCT CTGGCACTTC
GCGCAGCGCC GTGCGCTCGA CATCGATGGG CTCGGCGAGA AGATCATCGA TCAACTCGTC
GAGCAGAACC TCGTGCGCAC GCCGGCCGAT CTGTTCAATC TCGGCTTCTC GACGCTCGTC
GCGCTCGATC GCTTCGCGGA GAAATCCGCG CGGAACCTGA TCGATTCGCT CGAAAAGGCG
AAGCACACGA CGCTCGCGCG CTTCATTTAC GCGCTCGGCA TCCGGCACGT CGGCGAATCG
ACGGCGAAGG ACCTCGCGAA GCACTTCGGC TCGCTCGATC CGATCATGCA CGCGCCGATC
GACGCATTGC TCGAGGTCAA CGACGTCGGG CCGATCGTCG CCGAATCGAT CCATCAATTC
TTCGCCGAGG AGCACAATCG CACGGTGATC GAACAGTTGC GCGCGCGGGG CAAGGTCACA
TGGCCCGAAG GGCCGCCCGC GCCGCGCGCG CCGCAAGGCG TGCTCGCGGG CAAGACCGTC
GTGCTCACGG GCACGCTGCC GACGCTCACG CGGGAAGCCG CGAAGGAGAT GCTCGAGGCG
GCGGGCGCGA AAGTCGCGGG CTCGGTATCG AAGAAGACCG ATTACGTCGT CGCGGGCGCC
GACGCGGGCA GCAAGCTCGC GAAAGCCGAG GAACTCGGCA TTCCGGTGCT GGACGAAGCA
GGCATGCACA CACTTCTGGA GGGCCACGCG CGATGA
 
Protein sequence
MARSPVEPPA SQPAKRAAWL RAELERANYA YYVLDQPDLP DAEYDRLFVE LQRIEAEHPD 
LVTPDSPTQR VGGEAASGFT PVVHDKPMLS LNNGFADEDV IAFDKRVADG LDKATDLAGT
VTEPVEYACE LKFDGLAISL RYENGRFVQA STRGDGTTGE DVTENIRTIR AIPLTLKGKR
IPRMLDVRGE VLMFKRDFAR LNERQRAAGQ REFANPRNAA AGSLRQLDSK ITASRPLSFF
AYGIGVLDGA DMPDTHSGLL DWYETLGLPV NRERAVVRGA AGLLAFFHSV GERRESLPYD
IDGVVYKVNR RDEQDRLGFV SRAPRFALAH KFPAQEALTK LIAIDVQVGR TGAITPVARL
EPVFVGGATV TNATLHNEDE VRRKDIRIGD TVIVRRAGDV IPEVVSAVLD RRPADAQEFV
MPTECPECGS RIERLPDEAI ARCTGGLFCP AQRKQALWHF AQRRALDIDG LGEKIIDQLV
EQNLVRTPAD LFNLGFSTLV ALDRFAEKSA RNLIDSLEKA KHTTLARFIY ALGIRHVGES
TAKDLAKHFG SLDPIMHAPI DALLEVNDVG PIVAESIHQF FAEEHNRTVI EQLRARGKVT
WPEGPPAPRA PQGVLAGKTV VLTGTLPTLT REAAKEMLEA AGAKVAGSVS KKTDYVVAGA
DAGSKLAKAE ELGIPVLDEA GMHTLLEGHA R