| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_1918 |
|---|
| Symbol | emrB |
|---|
| ID | 3688764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007434 |
|---|
| Strand | - |
|---|
| Start bp | 2091163 |
|---|
| End bp | 2092722 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637728374 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_333317 |
|---|
| Protein GI | 76808918 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.190934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGC CACACGCTCC CCTTCCTCCG CTCGCGGGCG GACAACTGAT ACTCGGCACG
ATCGCGGTAT CGCTCGCCGT GTTCATGAAC GTGCTCGACA CGTCGATCGC CAACGTCGCG
ATCCCGACGA TCTCGGGCGA CCTCGGCGTA TCGTCCGACC AGGGCACCTG GGTCATCACG
TCGTTCGCGG TCGCGAACGC GATCTCGGTG CCGCTCACCG GCTGGCTCAC CGATCGCATC
GGCCAGGTGC GCCTGTTCCT CGCGTCGATC ATCCTGTTCG TGATCTCGTC GTGGATGTGC
GGCCTCGCGC CGACGCTGCC GTTCCTGCTC GCGTCGCGCG TGCTGCAGGG CGCGGTCGCC
GGGCCGATGA TCCCGCTGTC GCAAGCGTTG CTGCTGTCGA GCTATCCGCG CGCGAAAGCG
CCGATGGCGC TCGCGCTATG GTCGATGACG ACGCTGATCG CGCCGGTGGC GGGCCCGATT
CTCGGCGGCT GGATCTCGGA CAACTACTCG TGGCCGTGGA TCTTCTACGT GAACATTCCG
GTCGGCATCG CGGCCGCGGC CGTCACGTGG ATGATCTACC GCAGCCGCGA ATCGGCCGTG
CGCCGCGCGC CGATCGACGG CGTCGGGCTC GCCCTCCTCG TGATCTGGGT CGGCTCGCTG
CAGATCATGC TCGACAAGGG CAAGGACCTC GACTGGTTCG CGTCGACGAC GATCGTCGTG
CTCGCGCTCA CCGCGCTGAT CGCGTTCGCG TTCTTCGTCG TCTGGGAATT GACGGCCGAG
CATCCGGTCG TCGACCTGTC GCTGTTCCGG ATGCGCAACT TCTCCGGCGG CACGATCGCG
CTGTCGGTCG GCTACGGGCT CTACTTCGGC AACCTCGTGC TGCTGCCGCT GTGGCTGCAG
ACGCAGATCG GCTACACGGC GACCGACGCG GGGCTCGTGA TGGCGCCCGT CGGCTTCTTC
GCGATCCTGC TGTCGCCGCT CACGGGCAAG TTCCTGTCGC GCACCGATCC GCGCTACATC
GCGACGGCCG CGTTCCTCAC GTTCGCGCTG TGCTTCTGGA TGCGCTCGCG CTATACGACG
GGCGTCGACG AATGGTCGCT GATGGCACCG ACCTTCGTGC AGGGGATCGC GATGGCGGGC
TTCTTCATCC CGCTCGTGTC GATCACGCTG TCCGGCCTGC CGGGCCACCG GATTCCGGCC
GCGTCGGGCC TGTCGAACTT CGTGCGGATC ATGTGCGGCG GCATCGGGAC GTCGATCTTC
CAGACCGCGT GGGACCATCG GAACAACTTC CATCACGCGC AGCTCGTCGA GCAGGCGAAC
CCGTACAACC CGACGTTCAA CCAGGCGGTC ACGCAGATGG GGCAGCTCGG GTTCACGCGC
GGCCAGGCGC ACGGGCTCAT CAACAACATG GCGACGCAGC AGGCCGCGCA GTTGGGCGTG
AACGATCTGT TCTACATCTC GGCGGCGATC TTCGTGCTGC TGATCGCGCT CATCTGGATC
ACGAAGCCCG AGCGCGCGGG CGGCGGCGAT TCGAGCGCGG CGGCGTCGGC CGCGCACTGA
|
|---|
| Protein sequence | MAQPHAPLPP LAGGQLILGT IAVSLAVFMN VLDTSIANVA IPTISGDLGV SSDQGTWVIT
SFAVANAISV PLTGWLTDRI GQVRLFLASI ILFVISSWMC GLAPTLPFLL ASRVLQGAVA
GPMIPLSQAL LLSSYPRAKA PMALALWSMT TLIAPVAGPI LGGWISDNYS WPWIFYVNIP
VGIAAAAVTW MIYRSRESAV RRAPIDGVGL ALLVIWVGSL QIMLDKGKDL DWFASTTIVV
LALTALIAFA FFVVWELTAE HPVVDLSLFR MRNFSGGTIA LSVGYGLYFG NLVLLPLWLQ
TQIGYTATDA GLVMAPVGFF AILLSPLTGK FLSRTDPRYI ATAAFLTFAL CFWMRSRYTT
GVDEWSLMAP TFVQGIAMAG FFIPLVSITL SGLPGHRIPA ASGLSNFVRI MCGGIGTSIF
QTAWDHRNNF HHAQLVEQAN PYNPTFNQAV TQMGQLGFTR GQAHGLINNM ATQQAAQLGV
NDLFYISAAI FVLLIALIWI TKPERAGGGD SSAAASAAH
|
|---|
| |