| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_1220 |
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| Symbol | |
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| ID | 3688638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007434 |
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| Strand | - |
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| Start bp | 1268575 |
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| End bp | 1270986 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637727676 |
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| Product | fimbrial usher protein |
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| Protein accession | YP_332631 |
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| Protein GI | 76810703 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.348737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCCGC GCCTATTCGC ATCGCCGTCA CTCCCGGCCT CTCCCACGCC GGCGCCGCCG
CCCGCCCCCG GCGCATCGCC CCGCTCCGCC GCCTCGTCAG CGGCCCGGAC TATGCTCGCC
GAGGCGGCCG CGCCGCCCGC GCGGTCCGCA TTGCCCGGGC CGACGACGAG CCTGCCGGTG
CCGGGCGCCG ACGCGACCGT CCCCGCGAGC GACCTGTATC TCGGCGTCTC GCTGAACGGC
CAGCCGACGC ACCTGATCGT GCACTTCGTC GTCGCCGACG GGCGCTTCTA CGCGAGCCAG
GACGATCTGA ACGACATCGG CGTCGCGACG TCACGGCTGC GACAGCCGGC GAACGCGCTC
ATCGCGCTCG ATGCGCTCGA CGGCCTGCGC TACCGCTACG ACGCCGCGCG CCAGACGATC
GATCTCGACG CGCCCGATTC GCTGCGCATC CCGCACACGT TCGACACACG CGCGCTCGCG
CCGACGGTCC CCGCGAGCGC GGGCCGCGGC GTCGTGCTGA ATTACGACCT CTATGCGCAG
ACGGCCGATC GCGCGAGCGC GGCGCTCTGG CACGAGGCGC GCTACTTCGA TCCGGCTGGC
GTCTTCAGCA GCACGGGCGT CGCGTATTTT CAGCACGGCG GCCAGCGCTA CACGCGCTAC
GACACCTCGT GGAGCATGTC CGATCCGAAA TCGCTGACGA CGACGCAGTT CGGCGACACG
ATCTCGTCGT CGCTCGCCTG GACGCGCTCG CTGCGCGTCG CCGGCCTGCA ATGGCGCAGC
AACTTCGCGC TGCGCCCGGA CCTCGTGACG TTCCCCGTGC CGGCGCTCGC GGGCACGGCC
GTCGTGCCGT CGACCGTCGA TCTGTACGTG AACGGCGTGC GCCAGTTCAG CGGCGACGTG
CCGAGCGGCC CGTTCGTCAT CAACAGCGTG CCGGGCATCA CGGGCGCGGG CAACGCGACC
GTGGTCACGC GCGACGCGCT CGGGCGCACG ATCGCGACGT CGCTGCCGCT CTACATCGAC
ACGCGGATGC TCGCGCCCGG CCTCGCGAGC TATTCGGTCG AGGCGGGTTT CCTGCGGCGC
GCGTGGGGGC TGCGCTCGTT CGACTACGCG CCCCGCCCGG CCGTGAGCGC GACCGCGCGC
TACGGCGTGA GCGAGCGCCT GACCGTCGAG GCGCACGCGG AGGCGACGCC CGGCCTCTAC
AACGCGGGCG CGGGCGCGCT CGTGCGGCTC GGCGGCGCGG GGGTCGCGAG CGCGTCGGCC
GCGCAAAGCG CCGGGCGCCT CGCGGGCACG CAGGCCGGCC TCGGCTACCA GCTCGTGCTG
CCGCGCTTTT CGATCGACGC GCAAACGCTG CGCGCGTTCG GCCAATACGG CGACCTCGCC
GCGCGCGACG GCACGCCGGT GGCGAGCGCG ACCGATCGCG TCACGCTGTC GCTGCCGTTC
ATCCGCTCGC AGACGTTCGC GATCAGCTAC ATCGGCCTCA GGTATCCGGG CCTGCAAACC
GCGCGGATCG GCTCCGTGTC GTACTCGGTC AACGTCGGCA ACCTTGCGTC GATCAACGTC
AGCGCGTTCC AGGACTTCCA CCAGCACGAC TCGCGCGGCG TGTTCGTGAG CCTGAACGTC
GCGCTCGGCA ACCGGACGTC GGTCAACGCG AACGTCGGCC GGCAGAACGG CAAGACGGTC
TACAACGTGA ACGCGATGCG CGCGCCCGAC TACGGCGGCG GCTTCGGCTG GAGCGCGCAG
ACGGGCGACG CGGGCGGCGT GCGCTACGGC CAGGCGCAGG CGCGATATCT CGGCCGCTCG
GGCGAGGTGG CGGCGCTCGC GCAGACGATC GCCGGACATC AGAACGCGGC GCTCGACGTG
GCGGGCGCCG TCGTGCTGAT GGACGGCCGC GCGCTGCTCA CGCGGCGCAT CGACGACGGC
TTCGCGCTCG TGTCGACCGA CGCTTCGCCG GGCGTACCGG TGCTGCACGA GAATCGCCTG
ATCGGCACGA CCGACCGCAA CGGCTACCTG CTGATTCCGG ATCTGAACGC GTACCAGAAC
AACCGGATCG GCATCGACAC GTTGAAGCTG CCGCTCGACG CGCGCGTATC CGACACGATT
CGCAACGTCG TTCCGCAGTC GCGCTCGGGC GTGCTCGCGC ATTTCGCGAT CGCGCGCGAA
CAGTCGGCGT CGATCGTCCT CGAGGATGCG TCCGGCGCGC CGCTGCCGGC CGGGCTGTCG
GTCTCGCATC GCGAGAGCGG CGCGAGCACG ATCGTCGGCT ACGACGGGCT CACGTTCGTC
ACGGGCCTCG CGGCCGCCAA TCACCTGGAG ATCACGGGCC ACGGCAAGCG CTGCGCGGTC
GCGTTCGACT ACGTGCGCCC GGCCGACGGC ACGCCGCCGA CGATCGGGCC GCTCGTCTGC
GACCTGAAGT GA
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| Protein sequence | MSPRLFASPS LPASPTPAPP PAPGASPRSA ASSAARTMLA EAAAPPARSA LPGPTTSLPV
PGADATVPAS DLYLGVSLNG QPTHLIVHFV VADGRFYASQ DDLNDIGVAT SRLRQPANAL
IALDALDGLR YRYDAARQTI DLDAPDSLRI PHTFDTRALA PTVPASAGRG VVLNYDLYAQ
TADRASAALW HEARYFDPAG VFSSTGVAYF QHGGQRYTRY DTSWSMSDPK SLTTTQFGDT
ISSSLAWTRS LRVAGLQWRS NFALRPDLVT FPVPALAGTA VVPSTVDLYV NGVRQFSGDV
PSGPFVINSV PGITGAGNAT VVTRDALGRT IATSLPLYID TRMLAPGLAS YSVEAGFLRR
AWGLRSFDYA PRPAVSATAR YGVSERLTVE AHAEATPGLY NAGAGALVRL GGAGVASASA
AQSAGRLAGT QAGLGYQLVL PRFSIDAQTL RAFGQYGDLA ARDGTPVASA TDRVTLSLPF
IRSQTFAISY IGLRYPGLQT ARIGSVSYSV NVGNLASINV SAFQDFHQHD SRGVFVSLNV
ALGNRTSVNA NVGRQNGKTV YNVNAMRAPD YGGGFGWSAQ TGDAGGVRYG QAQARYLGRS
GEVAALAQTI AGHQNAALDV AGAVVLMDGR ALLTRRIDDG FALVSTDASP GVPVLHENRL
IGTTDRNGYL LIPDLNAYQN NRIGIDTLKL PLDARVSDTI RNVVPQSRSG VLAHFAIARE
QSASIVLEDA SGAPLPAGLS VSHRESGAST IVGYDGLTFV TGLAAANHLE ITGHGKRCAV
AFDYVRPADG TPPTIGPLVC DLK
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