| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4933 |
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| Symbol | |
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| ID | 3679120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 6203699 |
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| End bp | 6204355 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637720291 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_325425 |
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| Protein GI | 75911129 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.366814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCAAT CGATTACTGT ATCCTGGTCA ACGGTTGATG CGAGGTGTTC AGAAGCATCG
GTGCAAGTTG ACAAACTCTC TAACCACGAT TTAATTTTGC GCTGTCAATT AGGGCTGCGT
CCTGATCGTG TTGCGTTTGC CGAGCTATTG CGCCGCTATC AAACCCAGGT TGATAGAGTT
TTGTATCACT TAGCCCCTGA TTGGTCAGAC AGAGCCGACT TGGCTCAAGA AGTTTGGATT
CGCGTGTATC GGAATATTAA CCGATTGCAA GAACCATCTA AGTTTAGGGG CTGGTTAAGC
CGGATTGCCA CTAATTTGTT TTATGACGAA TTGCGTAAAC GCAAGCGGGT TGTAAGTCCT
TTGTCATTAG ATGCTCCCCG TTCTGTAGAT GATGGCGAAA TGGATTGGGA AATTGCTGGA
GATACACCAG GGCCAGAGGA AGAACTGACA ACTAGAGAAT TTTACGAACA ACTGCGAGAG
GCGATCGCGG ATTTACCAGA AGTATTTCGC ACTACCATTG TTCTGAGAGA AATCGAGGGT
ATGGCATACG AAGAAATCGC CGAAATCACA GGTGTATCCT TGGGAACAGT CAAGTCGAGA
ATTGCTAGAG CTAGATCCAG ATTGCAAACT CAATTGCAAA CTTATCTTGA TGCCTAA
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| Protein sequence | MSQSITVSWS TVDARCSEAS VQVDKLSNHD LILRCQLGLR PDRVAFAELL RRYQTQVDRV
LYHLAPDWSD RADLAQEVWI RVYRNINRLQ EPSKFRGWLS RIATNLFYDE LRKRKRVVSP
LSLDAPRSVD DGEMDWEIAG DTPGPEEELT TREFYEQLRE AIADLPEVFR TTIVLREIEG
MAYEEIAEIT GVSLGTVKSR IARARSRLQT QLQTYLDA
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