Gene Ava_4808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4808 
Symbol 
ID3679423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp6042793 
End bp6043623 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content47% 
IMG OID637720165 
Productfarnesyl-diphosphate farnesyltransferase 
Protein accessionYP_325300 
Protein GI75911004 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.03288e-13 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.956727 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTAC GTAGCGATGC CTTGCAAATC CTCAAAGACA CTAGTCGTAC TTTTTATATT 
CCAATTAGTA TTTTGCCGTC AGGATTACAA GAGGCAGTCG CGTCCGCATA CTTGTGTATG
CGTGCTATCG ATGAAATCGA AGACCATCCC ACCCTTGATA ACCCCACAAA AGCCAAGCTG
TTGCGTGGGA TTAGCTTGAC TCTACAAGCT GGGGTTGATG GTTTTCCTGT TGATGCCTTC
GCTGCCGGAT TTAGCGGTTA CGAGAATACC CTCGCAGAAG TCACTATGAG GATTCGAGAG
TGGTCTCTGC TTGCACCAGA AACAATTGCG CCGCGAATTT GGGATGCAAC GGCGGCTATG
TCAGACCGTA TGGCTTATTG GGCAGAAAAC AACTGGAAAA TTTATACAGA GTCTGACTTA
GATCGCTATA CCTTTGGGGT GGCTGGTGCA GTTGGTTTGC TACTCTCAGA TTTATGGACT
TGGTATGATG GGACACAAAC AAACCGGACT TTAGCGATTG GGTTTGGTAG AGGTTTGCAA
GCAGTTAATA TCCTGCGTAA CCATGTGGAA GATTTAGGAC GTGGAGTCAG CTTTTTTCCT
GACGGTTGGG ACGCAAACAA TATGCAGGAG TATGCCTTGC GAAATCTCGC CCTAGCAGAT
GCTTACACTC AAGCTTTACC AGATGGGCCA GCGCTCAACT TTTGTCAAAT CCCCTTGACA
TTGGCACATG GAACCATTGA TGCGATCGCC AACGGTAAAG AAAAACTCAG CCGTAACGAT
GTGATGGCAC TGCTGGAACA TCTCATCACT TTTAACTTGA AAGCAGGGTG A
 
Protein sequence
MDLRSDALQI LKDTSRTFYI PISILPSGLQ EAVASAYLCM RAIDEIEDHP TLDNPTKAKL 
LRGISLTLQA GVDGFPVDAF AAGFSGYENT LAEVTMRIRE WSLLAPETIA PRIWDATAAM
SDRMAYWAEN NWKIYTESDL DRYTFGVAGA VGLLLSDLWT WYDGTQTNRT LAIGFGRGLQ
AVNILRNHVE DLGRGVSFFP DGWDANNMQE YALRNLALAD AYTQALPDGP ALNFCQIPLT
LAHGTIDAIA NGKEKLSRND VMALLEHLIT FNLKAG