Gene Ava_4783 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4783 
Symbol 
ID3679436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp6013330 
End bp6015372 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content45% 
IMG OID637720139 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_325275 
Protein GI75910979 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.302794 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCCAG AACCCAAAGT CAACATCCTC CTAGTGGATG ATAAAGTGGA AAATTTACTG 
GCACTAGAGG CAATTTTGGA GCGTCTAGGC GCTAATTTAG TCAGGGCGAC TTCTGGGGAG
GAAGCTTTGC GGTGTCTGCT GCATCAAGAT TTTGCAGTAA TTTTGTTAGA TGTACAGATG
CCGGGGATGG ATGGTTTTGA AACAGCCACC CTCATTCGTA ATCGTGGGCG ATCGCGCCAA
ACTCCGATTA TCTTTCTCAC GGCTTTCAGT ACCAGTGACC AAATGCTATT CAAGGGTTAT
GCACTAGGGG CGGTTGATTA TCTCCTCAAA CCCATAGATG CAAATATTCT CACTTCTAAG
GTGACAGTAT TTGTTGAACT TTTTAAGAAA ACTCAAGCCA TCCAACGTCA AGCAGCGCAA
CTAGCGGCGA TTAATGCCGA ACTAAGACAA AGTGAAGAAC GCTTCCGTTC TTTAAGTACC
TGTTCACCCA TAGGTATATT TGAAACCGAT ACCGCAGGAT GTTGTAAATA TACAAATCCC
CGCTATCAAG CAATTTGTGG CTTGGATGCG ACAGAGAGTC TAGATAAAAG ATGGCTAGAA
TCTGTGCATC CAGAAGATCA GGAAAGAGCG ATCGCTAGTT GGTCTACTTA TATTGATCAA
GGCGGCGACT ATTCAGATGA ATTCCGCTTT CAAACAGTTG ATGGTAGCCT GCGATGGGTG
CAAGTACGCT CCTCACCAAT GCTTTCTGGG AATGGTGAAC TACTTGGCCA TGTCGGTACA
CTTGAAGATA TTACCGCCCG TAAGCAATCC GAAGAAATTC GCGCTCAAGT AATCCGCGAA
CAAACCGCCA GACAAGAAGC AGAGGCGGCG AATCGGATGA AAGATGAATT TTTGGCTGTT
CTCTCCCATG AACTCCGCAC CCCCCTAACT TCCATGTTGG GCTGGTCAAA AATTCTCCGT
GCCAAAAAAC TAGACGAAAA AGCCACAGCC AGAGCCTTGG AAGCAATTGA ACGTAATGCT
AATTCACAAG TGCAATTAAT AGAAGATATT TTAGATGTAT CCCGGATTAT TCGCGGCCAA
CTGCGGCTAA ATTTATCTCC TGTCAACTTG ACAACTGTGG TGGAAGCGGC TCTAGAAGCA
GTGCGTCCTC TAGCAGATAC AAAAAGTATG ACCATCAACA CTGCGCTTGA CTACACCTTA
AGTCCTGTCA GTGGTGATTC TGCCAGATTA CAGCAAATTG TCTGGAATCT TCTGACTAAC
GCGATTAAGT TCACACCGAA AGAAGGTAAG GTGGAAATCC GATTAGAAGG GATAAGTGGT
GGATTATCTG ATGATTTGAC TCATGCTCAA ATCCAAGTTA TCGATACAGG AATTGGCATT
GAACGTGAAT TTCTCCCTAA AGTCTTTGAG CGTTTCCGCC AAGCAGATAG TACCACCACG
CGATCGCATA ACGGATTAGG GCTAGGGTTG GCAATTGTTC GCCATTTAGT GGAACTGCAC
AAAGGTACGA TTTTGGCAGA AAGTCCAGGT GTGGGCAAAG GAGCCACTTT TACTGTGAGA
TTTCCCCTCA TCCAAGAAAA TCGGGAACCT CGACCAGCAC CTACAGAAAA CTTTTCTGGA
GATGGGGCTA ACTCTTCCCC CCTTGCAGGC TTAAAAGTTC TCATTGTTGA CGATGAAACC
GATACTCGCA ACTTCTTAGG CTTCTTATTT GAAGAGTATG GGGCGATTTC CTCCACCAGT
GCATCAGTCG AGACTGCGTT AGCCGTCATC GACCAGTTAA AACCAGATAT CCTGATTAGC
GATATTGGTA TGGCAGAACA AGATGGTTAT ACTCTCATCC GCAAACTACG CTCCTTACCA
CCAGAACAAG GTGGAGAAAT TCCGGCGATC GCCTTAACTG CATATTCACG AGAAGAAGAC
CGCCAGCAAA TTATAGAAGC TGGGTTTCAG TATCACTTAT GCAAACCAAT TGATCCCAAC
CAATTAATTT CCGTAGTAGC CAGTATTTTC CGTCTATCCC CAGCACTAAG CAAGTTAGGG
TAA
 
Protein sequence
MQPEPKVNIL LVDDKVENLL ALEAILERLG ANLVRATSGE EALRCLLHQD FAVILLDVQM 
PGMDGFETAT LIRNRGRSRQ TPIIFLTAFS TSDQMLFKGY ALGAVDYLLK PIDANILTSK
VTVFVELFKK TQAIQRQAAQ LAAINAELRQ SEERFRSLST CSPIGIFETD TAGCCKYTNP
RYQAICGLDA TESLDKRWLE SVHPEDQERA IASWSTYIDQ GGDYSDEFRF QTVDGSLRWV
QVRSSPMLSG NGELLGHVGT LEDITARKQS EEIRAQVIRE QTARQEAEAA NRMKDEFLAV
LSHELRTPLT SMLGWSKILR AKKLDEKATA RALEAIERNA NSQVQLIEDI LDVSRIIRGQ
LRLNLSPVNL TTVVEAALEA VRPLADTKSM TINTALDYTL SPVSGDSARL QQIVWNLLTN
AIKFTPKEGK VEIRLEGISG GLSDDLTHAQ IQVIDTGIGI EREFLPKVFE RFRQADSTTT
RSHNGLGLGL AIVRHLVELH KGTILAESPG VGKGATFTVR FPLIQENREP RPAPTENFSG
DGANSSPLAG LKVLIVDDET DTRNFLGFLF EEYGAISSTS ASVETALAVI DQLKPDILIS
DIGMAEQDGY TLIRKLRSLP PEQGGEIPAI ALTAYSREED RQQIIEAGFQ YHLCKPIDPN
QLISVVASIF RLSPALSKLG