| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4425 |
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| Symbol | |
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| ID | 3680456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 5540605 |
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| End bp | 5543247 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637719778 |
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| Product | diguanylate cyclase/phosphodiesterase with FHA and GAF sensor |
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| Protein accession | YP_324918 |
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| Protein GI | 75910622 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGGCA ACGAGTGGGA GAAAATACGC CACATACTAG TTGTCCAAGA CTTGCAAGGA
CAGCGCACCA TACCATTGCA GGAGGCCACT TATTCTATTG GACGGCATAC CAGTAATGCG
ATTGTTCTCC ATTCTCGGTC AGTATCCAGA CAACACGCCA TTTTACTGCG GGTAACCCTT
CCTGAGACTG ACCAATGTAG TTTTCGGATC ATTGATGGCA ACTTCAAAGG ACAGGGAAGC
ACTAATGGTT TACTTGTAAA TGGGACTAGA TGCTTTTCCC ACAATCTCAG GCACGGGGAT
GTGATCAACT TTGGTAGCCA TCAAGCTCAA GCCAAATACT ATGCTATTTC CAACATTTCC
GAAAAAGCTT TTTTTGCATC TGCTGACGTT GAAGACTTAT CAACGTTTTT ATCTGAGCTG
TCCCAACCTG TTAATCCTTT TCAAACTTTA GTTGTTGATC CTGAGTTTGA AGGTGCTAGT
GAGACTGCTT TAGCTCGCTT AGCATCCTTC CCAGAACTGA TTCCCAATCC AATTATTGAG
ACAGATTTAG AAGGACGAGT CACATATATC AACCCAGCTG CATCTGTGAA ATTTCCAGAT
TTGCGAGAAC TGGGTAAACG ACATCCGATT TTAAAAGATA TTCTCAATGT TGCTGAAAAC
CCCAAAATCA ATCCGTTTGT CCGAGAAGTG ACAGTTGGTC ATGCAGTTTA TGAACAATCA
GTCCATAATT TACCAGAAAG CGATTTAATT AGAACCTATA TTATACGTGA TATTACTGAA
CAAAAACAAG CTGAAGCCGA ACTACATCAG CGCGATCGCC TGTTACAGGC AGTAGCAGAA
GCGGCTAATT GGTTAGTTGT GGAAATGAAT TATGACACTG CTATTGAAAA AGCTTTAGCT
GTCGTGGGTG AAGCCGCCCA GGCAGACCGA GCTTATTTAT TTAAAAACCA TCCTCATCCC
GTTACGGGGA AAACGGCAGT AAGCTTACAA TTTGAATGGT ATTGCTCCGG CCTCCAGCCT
TCTATTCAAT ATTGGCAGAA TCAGCTTTAT CAGTCTGCTG AATTATCACG TTGGTACAGT
ATTTTATCTA GTGGTAAATC CATCAATGAA CTGAGGCGAA AATTGCCCAT AGTGGAACGT
GAACTTCTGG AAAGGCAGGG GATTCAGTCT CTGTTGTTAG TACCTCTGAG ACTAGAAGAT
CAATTTTGGG GCTACCTTGG TTTAGCAGAT TGCACTCAAG AGCGTTACTG GTCAAGGCAT
GAAGAATCTA CACTTTTGAC AATGGCAGCT AGTATTAGTG GTGCTTGGCA ACGTCAACAA
GTGGAAGAAA AAATTCGCTA CCAAGCCCTA CATGATTTGC TGACAGGATT ACCCAATCGC
TTACTATTTA ATGAGTTACT GGCTAAAGCT TTAGCTAACG CATCGCGCAG TCAACAGAGC
TTAGCTGTCA TGTTTCTTGA CCTGGATCGT TTCAAAGTCA TTAATGATAC TCTGGGTCAT
AGCTTGGGCG ATCGCTTATT AAAAAGTGTC GCCCAAAGAT TGTGTGACTG TCTGAGAAGT
GGAGACACTG TTTCTCGTTG GGGAGGTGAT GAATTTACAA TTCTCCTACC CCACATAAGT
TATATCGAAG AAGTCACCCA GGCAGCTTAC AGGATTCTCA AAGCTTTAGA AGAAGTTTTC
CATCTGGATG GGCATGAACT TTACGTAAGT GCTAGTTTGG GCATAGCTTT ACTCGATCAC
CACAGTCCAG ATGCAGAAGC TTTAATTAAA CACGCAGACG CAGCCCTGTA TCATGCCAAA
GATGAGGGGA GAAATAACTA TCAGTTTTAC ACCACTAGCT TAAGTGGTAA AACCCCAGAA
CTGCTAACTT TAGAAAAAAG TCTGCGTTAT GCCTTAGAAA AGCAAGAATT AACAGTTTAC
TATCAACCCC GCGTTAATAT CCTCACCGGA CAAATTACTG GTATGGAAGC ATTGTTACGC
TGGCAACATC CAGAAATGGG GATAGTAGCA CCGAGTATTT TTATTCCCAT TGCTGAGGAA
ACTGGGTTAA TTATTCCTAT TGGTGAATGG GTATTGCGTA CAGCCTGTAT GCAAAACCGA
GCTTGGCAAG AAGCTGGATT ACCTCCTTTG CAAATGGCTG TCAACCTTTC TCCCAAACAG
TTTCGTCAAC CCAATTTGCT AGAAATTGTC TCGGCAATTT TAGCCGAAAC AAGTTTAGCA
CCAGAGTTTT TAGAATTAGA AATTACGGAA TCAACAGCTA TTGAGGATAT TGATTTTACT
AGGAGTGTGT TAGAAAATTT GCAGCAGATG GGTGTTGATA TTGCCATTGA TGACTTCGGT
ACTGGCCATT CTTCCTTATC CCGGTTACAG CTTTTACCAC TCCACAATCT GAAAATTGAT
GGGTCTTTCA TCAAAGCATT GACCACAGAT AGCAAAGTAG CACATATCGT CAAGGCGATC
GTGACTTTGG GCAGGAGTCT AGGTTTGAGG CTAACGGCTG AAGGGGTAGA AAAGCAGGAA
GAACTCGATT TTTTAAAATC AATCAACTGT CAGGATGTCC AAGGTTTCTT GTTCTATAAG
CCTCTTTCTG CCGAAAAAGC AACGGAAATT CTTCAAAGTG AAAGAAAACA CGCTGCTCTA
TGA
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| Protein sequence | MPGNEWEKIR HILVVQDLQG QRTIPLQEAT YSIGRHTSNA IVLHSRSVSR QHAILLRVTL
PETDQCSFRI IDGNFKGQGS TNGLLVNGTR CFSHNLRHGD VINFGSHQAQ AKYYAISNIS
EKAFFASADV EDLSTFLSEL SQPVNPFQTL VVDPEFEGAS ETALARLASF PELIPNPIIE
TDLEGRVTYI NPAASVKFPD LRELGKRHPI LKDILNVAEN PKINPFVREV TVGHAVYEQS
VHNLPESDLI RTYIIRDITE QKQAEAELHQ RDRLLQAVAE AANWLVVEMN YDTAIEKALA
VVGEAAQADR AYLFKNHPHP VTGKTAVSLQ FEWYCSGLQP SIQYWQNQLY QSAELSRWYS
ILSSGKSINE LRRKLPIVER ELLERQGIQS LLLVPLRLED QFWGYLGLAD CTQERYWSRH
EESTLLTMAA SISGAWQRQQ VEEKIRYQAL HDLLTGLPNR LLFNELLAKA LANASRSQQS
LAVMFLDLDR FKVINDTLGH SLGDRLLKSV AQRLCDCLRS GDTVSRWGGD EFTILLPHIS
YIEEVTQAAY RILKALEEVF HLDGHELYVS ASLGIALLDH HSPDAEALIK HADAALYHAK
DEGRNNYQFY TTSLSGKTPE LLTLEKSLRY ALEKQELTVY YQPRVNILTG QITGMEALLR
WQHPEMGIVA PSIFIPIAEE TGLIIPIGEW VLRTACMQNR AWQEAGLPPL QMAVNLSPKQ
FRQPNLLEIV SAILAETSLA PEFLELEITE STAIEDIDFT RSVLENLQQM GVDIAIDDFG
TGHSSLSRLQ LLPLHNLKID GSFIKALTTD SKVAHIVKAI VTLGRSLGLR LTAEGVEKQE
ELDFLKSINC QDVQGFLFYK PLSAEKATEI LQSERKHAAL
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