| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4328 |
|---|
| Symbol | |
|---|
| ID | 3680762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5424019 |
|---|
| End bp | 5424903 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637719676 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_324821 |
|---|
| Protein GI | 75910525 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTGA ACAGTGAACA ACTCAAAACA CTAATAACTG TAGAACCCAG TTCCCAATCC
CTTATTTTTC GGAGTGCAAT TTCCATGAGT TTAGAACTAA ACCTAACAGG TAAAACAGCG
ATCGTTACAG GCGGAAGTGC TGGGATTGGG TTAGCCGTTG CCAAAGCACT TTATAGTGAG
GGTGTAAATG TAGCGATCGC CTCTCGTAGC CAAGAACGGT TAGAAAATGC CGTTAGTGCG
ATCCAATCCT TACCCACACC TGGAGCAAAA GTCATTGCTA TCAGTGCTGA CTTGACTCAA
GCCGAAAGTG TTGATCGAGT CGTATCAAGC ACACTGGCAC AGTTTGGTCA GATTGATATC
TTGATTAATA ACGCTGGTTC AGCCCGTGCT GGATCATTCC TTGACTCCAC CGATGATTTA
TTTTTGGATG CTTGGAATTT AAAATTATTG GGTTACATTC GCTTTGTCAG AGCCGTTGTA
CCCCATCTCA GAAGCCAGGG TGATGGCCGG ATTGTGAATA TAATCGGCGG TGCAGGGCGC
ACGCCTCGTC CTAACTTCCT CGCTGGTGGG ACATCAAATG CAGCTTTGCT CAATTTCACC
AAAGGCATTT CTAAAGAATT AGCCGAGTAC AACATTCGTA TTAATGCCAT CTCACCCGGT
GCTACAGCTA CCGAGCGTGC TGAGACTTTA GCCAGACAAA ACGCCCAAGC GCGGGGGATT
ACTGTAGAGC AAGCAAAAGC AGAAAGTCTC CAAAGTATTC CTTTAAAAAG AATCGCCCAA
CCAGACGAAA TTGCCGCGTT GGCGCTATTT TTGGTGTCTG ATCTCGCCGC ATCCATTACC
GGAACCGAGA TCATTGTTGA TGGCGGTTCT ACCCCTGGGG TGTGA
|
|---|
| Protein sequence | MSVNSEQLKT LITVEPSSQS LIFRSAISMS LELNLTGKTA IVTGGSAGIG LAVAKALYSE
GVNVAIASRS QERLENAVSA IQSLPTPGAK VIAISADLTQ AESVDRVVSS TLAQFGQIDI
LINNAGSARA GSFLDSTDDL FLDAWNLKLL GYIRFVRAVV PHLRSQGDGR IVNIIGGAGR
TPRPNFLAGG TSNAALLNFT KGISKELAEY NIRINAISPG ATATERAETL ARQNAQARGI
TVEQAKAESL QSIPLKRIAQ PDEIAALALF LVSDLAASIT GTEIIVDGGS TPGV
|
|---|
| |