| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4246 |
|---|
| Symbol | |
|---|
| ID | 3680894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5325795 |
|---|
| End bp | 5326724 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637719594 |
|---|
| Product | Fe-S cluster assembly protein NifU |
|---|
| Protein accession | YP_324740 |
|---|
| Protein GI | 75910444 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation |
|---|
| TIGRFAM ID | [TIGR02000] Fe-S cluster assembly protein NifU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.451507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGAAT ATACAGAGAA GGTATTAGAG CTTTTTTACA ATCCCAAAAA CCAAGGTGCG
ATCGCAGATA GTAACGAAGC AGGTGTGGCA GTGGTTTTTG GTGAGGTGGG TAGTATTGCC
TGCGGAGATG CTTTGAGACT GCACCTGAAG ATAGAAGTAG ACACTGATAA AATTCTGGAT
GCTCGTTTTC AGACCTTTGG TTGTACCAGT GCGATCGCTT CTTCCTCGGC TTTGACTGAG
TTAGTTAAGG GTTTAACTTT AGATGCAGCG CTGAAAGTTA CCAATAAGGA GATTGCTGAA
TACCTGGGGG GATTACCAGA AGCCAAGATG CACTGTTCGG TAATGGGGCA AGAAGCTTTA
GAAGCAGCGA TTTTCAAATA TCGAGGTATT CCTGTAGCTG CTCATGATGA TGATGAAGGG
GCGTTAGTTT GTCGCTGCTT TGGAATCAGC GAGTCTAAAG TTCGCCGTGT GATTCGGGAA
AACAACCTCA CCACTGCCGA ACAGGTAACA AGTTATATCA AAGCTGGTGG CGGTTGCGGT
TCTTGTCTAG CTGATATCGA TGACCTCATC TCTGCGGTTA TCAAGGAATC AGCACCTGTG
GGTACTAGCT ACAAATTAAG TACACAAATT GCCGCTACTA CTCAGAAACA ATCCCCACGA
CAGCTAACAA CTGTCCAAAA AATCGCCTTG ATTCAAAAAG TTTTGGATGA AGAAGTTAGA
CCACTACTGA TTGCTGATGG GGGAGATATC GAACTGTACG ATGTGCAAGG AGATAACGTC
CAAGTAGTAT TGCAAGGTGC TTGTGGTTCT TGTCCTAGCA GTACCGCCAC CCTCAAAGTT
GCCGTTGAAG CCAAATTACA AGAGCGTGTT AGCCAAAGCT TGCGAGTAGA AGCAGTTGAC
CCATTATTCA GTGTCAGTAG AGCTAGATAA
|
|---|
| Protein sequence | MWEYTEKVLE LFYNPKNQGA IADSNEAGVA VVFGEVGSIA CGDALRLHLK IEVDTDKILD
ARFQTFGCTS AIASSSALTE LVKGLTLDAA LKVTNKEIAE YLGGLPEAKM HCSVMGQEAL
EAAIFKYRGI PVAAHDDDEG ALVCRCFGIS ESKVRRVIRE NNLTTAEQVT SYIKAGGGCG
SCLADIDDLI SAVIKESAPV GTSYKLSTQI AATTQKQSPR QLTTVQKIAL IQKVLDEEVR
PLLIADGGDI ELYDVQGDNV QVVLQGACGS CPSSTATLKV AVEAKLQERV SQSLRVEAVD
PLFSVSRAR
|
|---|
| |