| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4121 |
|---|
| Symbol | |
|---|
| ID | 3681509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 5135070 |
|---|
| End bp | 5136140 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637719467 |
|---|
| Product | photosystem II reaction centre protein PsbA/D1 |
|---|
| Protein accession | YP_324615 |
|---|
| Protein GI | 75910319 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01151] photosystem II, DI subunit (also called Q(B)) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0216201 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCA TTGTTCAACG TCAAAAGGAA TTTAATTTTT TTGATTTATG GGATAGTTTT
TGTGCGTGGA TTACCAGCAC AGAAAATCGG ATTTATATCG GCTGGTTTGG TGTCTTGTCG
ATTCCTACCT TGCTAGCTGC TACCACCTGT TTTGTTTTGG CTTTTATTGC TGCGCCTAGC
GTAGATATGG ATGGTATACG TGAGCCAATT ATGGGTTCAC TAATGGACGG TAATAATTTA
ATTACAGCCG CAGTAGTGCC GACTTCTGCT GCGATTGGTT TGCACTTTTA TCCTATCTGG
GAAGCGGCAT CAATGGATGA ATGGCTTTAC AATGGCGGGC CATATCAGTT GATTGTGCTG
CATTTTCTGA TTGGTATTTG GTGCTTACTA GGGCGATTTT GGGAACTTAG TTATCGTTTA
GGAATGCGAC CTTGGATAGC AGTTGCCTAT TCTGCACCTG TGATTGCTGC TACTTCCGTT
TTGTTAGTTT ATCCTATTGG TCAAGGTAGT TTTTCTGATG GTTTACCTTT GGGAATTGCT
GGAACTTTCC ACTTTATGTT GGCTTTCCAA GGCGATCATA ATATCCTGAT GCACCCGTTC
CATATGTTGG GTGTAGCAGG TGTATTTGGT GGCGCACTGT TGAGTTCTTT GCATGGTTCT
TTAGTGGCTT CAACGCTAAT TCGCAATACC GATGAAAATG AATCCATCAA TGGTGGATAT
AAGCTGGGTC AGCAGCAAGT AACATACAAA TACTTGGCAG GACACAATAG CTTCTTGGGA
CGCTTGTTGA TTCCTACCTT TGCTAGCAGA AATCATCGTG CTTTCCATTT CTTATTAGCA
GCATTACCAA CAATAGGTAT TTGGTTTGCG GCGATGGGTG TATGTTCAAT GGCATTTAAT
CTCAATGGCT TGAACTTTAA TCATTCCATC TTAGATAGTC GGGGTAATGT AATTAGAAGC
GACGCTGATA TCTTAAACCG TGCCAATATT GGTCTCAGTG TCATGCACGC TCCTAATGTC
CATAATTTTC CATTGGTGCT GTCTAGCGGT CAACCTATTC CAGTTAGTTA A
|
|---|
| Protein sequence | MSTIVQRQKE FNFFDLWDSF CAWITSTENR IYIGWFGVLS IPTLLAATTC FVLAFIAAPS
VDMDGIREPI MGSLMDGNNL ITAAVVPTSA AIGLHFYPIW EAASMDEWLY NGGPYQLIVL
HFLIGIWCLL GRFWELSYRL GMRPWIAVAY SAPVIAATSV LLVYPIGQGS FSDGLPLGIA
GTFHFMLAFQ GDHNILMHPF HMLGVAGVFG GALLSSLHGS LVASTLIRNT DENESINGGY
KLGQQQVTYK YLAGHNSFLG RLLIPTFASR NHRAFHFLLA ALPTIGIWFA AMGVCSMAFN
LNGLNFNHSI LDSRGNVIRS DADILNRANI GLSVMHAPNV HNFPLVLSSG QPIPVS
|
|---|
| |