Gene Ava_3886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3886 
Symbol 
ID3683617 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4839222 
End bp4840727 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content40% 
IMG OID637719238 
Productamino acid ABC transporter permease 
Protein accessionYP_324386 
Protein GI75910090 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0765] ABC-type amino acid transport system, permease component
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGC GGGTTTTTGG ACGTTGGTGT CTGGTGTTGA GCTTAATTTG TTTGTTACTT 
ACTGGTTGTA GTGGCAATTT AAGTCAAGAA AAAACTCTAA GGATAGCAAC AGAACCAGCC
TTTCCACCTT TTGAGTTTAC AGGGCAAGGG GGAAATTTAC AGGGTTTTTC TATAGATTTG
ATGAATGCCA TCGCCTCTGC TGCTAACTTG AGAGTAAGTT TCCAAAGTCT GCCTTTTGAC
GGGATTATCC CCGCCTTGCA AAGCAGAACT GTAGACGCGG CGATTAGTTC CATCACCATC
ACCGCCGAAC GGGCAAAAAC CGTTGCGTTC TCTCGTCCTT ATTTTAAAGC AGGGTTAGCG
ATCGCTATTC GCTCCAGCGA TGAAGATATT ACAGGTTTTG ACAGTCTCAA AAATAAAAAA
ATCGCCGTGC AGATTGGCAC AACCGGCGCA GAAAAAGCCA AAAGTATTCC AGGGGCGCAA
ATTCGTAGCT TTGATTCTGC ACCCCTAGCC CTACAAGAAT TACTGAATAG CAATGTAGAT
GCAGTCATCA ATGATGCACC TGTGACTTTA TATGCTATTA ATACAGGCAA TTTACAAGGA
ATTAAAGTTG TCGAAAAGTT GCTAACAGAA GAATATTATG GTATTGCTAC AGCCCAAAAC
TCACCTTATT TGGCACTAAT TAATGATGGA TTAAATCGGG TGTTAACAAA TGGTACCTAT
TCCCAAATTT ACCAGAAATG GTTCAAAGCA GAACCACCAT CTTTACCAGA TAAATCACTC
TATGAAAATC AAAATAATAC TCGTAAATCT AGCTCAATTA AACTGATTTT ACAGTTTCTC
CCGACTTTAT TACAAGGTGC ATTAGTCACC ATACAACTGA CAATTTTGTC TACATTATTG
GGGTTAATAT GTGGTACTTT AATTGCGTTG ATTCGTCTTT CCCAATTTAC CCCTGCACGT
TTATTAGCCA GAGCTTATGT AGATTTCTTC CGGGGAACAC CTCTGCTAGT ACAAATTTTT
ATGATTTACT TTGGAATACC AGCACTTGCT CAACAACTTG GTTTTACATT TAACTTTGAC
CGTTGGGTAG CGGGAGTTAT TGCCTTAAGT GTAAATGCAG CCGCCTACAT CGCTGAAATT
GTCCGTGCTG GTATTCAATC AATAGAAATT GGACAAACAG AAGCGGCTAA ATCATTAGGT
TTAAATCCTT GGTTGACAAT GCGTCTGGTA ATTTTTCCCC AAGCCTTCCG GCGAATGTTA
CCACCTTTGG GTAATGAGTT CATCAGTTTG TTAAAGGATA CGAGTTTAGT TGCCGTGATT
GGATTTGAAG AGTTATTCCG CAAAGGGCAA TTGATTGTTG CAGACAACTA TCGTGCCTTT
GAAATTTATG CGGCTGTCGC CATAGTATAT TTATGTTTAA CACTTTTAGC TTCTCAAGTT
CTGAGCCGTT TAGAAATGTG GATGAATCCG ACCATGAAAG CTCAACAACG AAAAGCCAAA
AGATGA
 
Protein sequence
MSKRVFGRWC LVLSLICLLL TGCSGNLSQE KTLRIATEPA FPPFEFTGQG GNLQGFSIDL 
MNAIASAANL RVSFQSLPFD GIIPALQSRT VDAAISSITI TAERAKTVAF SRPYFKAGLA
IAIRSSDEDI TGFDSLKNKK IAVQIGTTGA EKAKSIPGAQ IRSFDSAPLA LQELLNSNVD
AVINDAPVTL YAINTGNLQG IKVVEKLLTE EYYGIATAQN SPYLALINDG LNRVLTNGTY
SQIYQKWFKA EPPSLPDKSL YENQNNTRKS SSIKLILQFL PTLLQGALVT IQLTILSTLL
GLICGTLIAL IRLSQFTPAR LLARAYVDFF RGTPLLVQIF MIYFGIPALA QQLGFTFNFD
RWVAGVIALS VNAAAYIAEI VRAGIQSIEI GQTEAAKSLG LNPWLTMRLV IFPQAFRRML
PPLGNEFISL LKDTSLVAVI GFEELFRKGQ LIVADNYRAF EIYAAVAIVY LCLTLLASQV
LSRLEMWMNP TMKAQQRKAK R