| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3660 |
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| Symbol | |
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| ID | 3679216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 4566866 |
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| End bp | 4568161 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637719011 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_324161 |
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| Protein GI | 75909865 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGAAT CCCAGTCCCC ATCAACTTCC CATCCCGTTG CTTCACGTAA TATACAGCCT
GTACCACCGC CACCATTACC ACCGCCACCA TCGTTAATTA CCCAAAGGCA GCATACACAA
ACCTTGGATA TGTCATCAGT TAATAGGAGT GCAAACCAAC CTTCACCACC TCCACCACCT
AGTGCGGCTC ATCGTCCTGG GACACCGCCA TCGGTTTCAA ACCCATCTAA TGATTCGCCT
TTAACTTTGG CACAGATTAT TAGAGAAGCT TTTGATAATG GCTATTCTGA TATTCACTTG
GGTGTCGGTG AAGTTCCCCG CTACCGCAAC CGAGGTGAAA TTAACCCAAC TGACTATCCC
GAAACCGATA AAGCAACTTT TATGAGTTGG TTACGGGAAA TCATGACTGA GCCAGAAATT
CAACGCTTCC AAGAGCATTT GGAATTTGAT GGTGCAACTC AGTACGAATT TGCCCGTGTA
CGGATTAATG TCTTTGATTC TCTCAAAGGC TATTCGATGG TTTTGCGGTT GATTCCATTG
AAGATACTCT CTATTGACCA GTTGAGATTA CCACCAGTAT TTCGGGATGT TTGTCACACT
CACAAAGGTT TAATTTTGGT GACAGGCCCT ACTGGTTCTG GTAAATCTAC AACAATGGCG
GCAATGATTG ATTACATCAA TCGAGAAATG CCTAAGCACA TCATTACTAT TGAAGACCCT
GTAGAATTCG TTCACCAAAG CCGTAAGTCT TTGATTAAGC AACGGGAAGT GGGAATGCAC
ACCCGTAAAT TTGATAATGC TTTAAAAGCG GCTTTGCGGG AAGACCCAGA CTTGATTCTG
GTGGGGGAAA TGCGGGATAA AGAAACCGTC AATACAGCAC TGAAAGCGGC TCAAACTGGT
CACTTGGTAA TGGGAACCCT ACACACCAAT AGTGCAGTGA AAACTATTGA ACGGATTCTT
AATTTATATT CAGGTGAAGA ACAGGATGCT ATGCGAATAG CCATAGCAGA GTCTTTGGTA
GCGGTGATTG CTCAAGGGTT GTGTCGCACA ACTGATGGTA AGCGGGCAGC TTTCCACGAT
ATTTTGATTA ATACTGAAGC AATCAAGGAA TGGATTAAGG ATGGTAAATA TGATGAAATT
AGCGAACTGA TGAAGCAAGC TAGTTTTGAC GGGATGGTGA CGATGAATCA ATCTTTGCTC
AATCTCTATC AAGAAGGCCG CATCACTGAA GAAACTGCGC TGGAAATGTC ACCAACTCCT
AACGAAATGG CTCAGTTCCT TCGAGGACGA GTTTAG
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| Protein sequence | MTESQSPSTS HPVASRNIQP VPPPPLPPPP SLITQRQHTQ TLDMSSVNRS ANQPSPPPPP
SAAHRPGTPP SVSNPSNDSP LTLAQIIREA FDNGYSDIHL GVGEVPRYRN RGEINPTDYP
ETDKATFMSW LREIMTEPEI QRFQEHLEFD GATQYEFARV RINVFDSLKG YSMVLRLIPL
KILSIDQLRL PPVFRDVCHT HKGLILVTGP TGSGKSTTMA AMIDYINREM PKHIITIEDP
VEFVHQSRKS LIKQREVGMH TRKFDNALKA ALREDPDLIL VGEMRDKETV NTALKAAQTG
HLVMGTLHTN SAVKTIERIL NLYSGEEQDA MRIAIAESLV AVIAQGLCRT TDGKRAAFHD
ILINTEAIKE WIKDGKYDEI SELMKQASFD GMVTMNQSLL NLYQEGRITE ETALEMSPTP
NEMAQFLRGR V
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