| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3643 |
|---|
| Symbol | |
|---|
| ID | 3679238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 4543785 |
|---|
| End bp | 4547327 |
|---|
| Gene Length | 3543 bp |
|---|
| Protein Length | 1180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637718994 |
|---|
| Product | Na-Ca exchanger/integrin-beta4 |
|---|
| Protein accession | YP_324144 |
|---|
| Protein GI | 75909848 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCTA TTTCAGGAAC AAACGGCAAC GATAATTTAA GCGGCACTTC TGGCGACGAT
ATTATTCAAG GCTTCAATGG TAATGATACA CTTTCTGGAC TAGGTGGAAA TGACCGTTTG
GAAGGTGGTC GGGGTGATGA TACCTTAACC GGTGGCGCTG GTAATGATGT CTTTAACTTT
GAACAGTTGC AAGACAATGA TGTAGTTACA GATTTTGTGC GTGGACAAGA CAAAATAGAT
GTCAGAAACC TGAATATTAA TGATTGGGCT ACCCTACAAT TACTCATTAG TAATGATGGT
CAAGACAATG CCTTAATTAC TACTTTTTCT AGTGGTTCTC AGTCGCGAAT CAAACTACTG
AATATCAATC CAAACCTACT ACAAGCTAGT GATTTCATCT TCAACACCGT TAACCTGAAT
CAAACTATCG AGGGTACTAA CTTCGCAGAT CAGTTATTCG GTGGTTTAGG TAATGATACC
CTCAGAGGAT TTAATGGTAA TGATGTCTTA TTTGGTGAAC AGGGTGATGA CCGTTTTGAA
GGTGGTCGGG GTGATGATAC TTTCTATGGT GGTGCTGGTA ATGATGTCTT TAACTTGGAA
CAGCTACAAG ACAATGATGT AGTCATAGAT TTTGTACGTG GACAAGACAA AATAGATGTC
AGAAACCTGA ATATTAATGA TTGGGCTACC CTACAATTAC TCATTAGTAA TGATGGTCAA
GACAATGCCT TAATTACTAC TTTTTCTAGT GGTTCTCAGT CACAAATTAA ACTACTGAAT
ATTAATCCAA ACCTACTCCA AGCTAGTGAT TTCATCTTCA ACACCGTTAA CCTCAATCAA
ACTATCGATG GTACTAACTT TGCAGATCAG TTATTCGGTG GTTTAGGTAA TGATACCCTC
AGAGGATTTA ATGGTAATGA TGTCTTATTT GGTGAACAGG GTGATGACCG TTTTGAAGGT
GGTCGGGGTG ATGATACTTT CTATGGTGGT GCTGGTAATG ATGTCTTTAA CTTGGAACAG
CTACAAGACA ATGATGTAGT CATAGATTTT GTACGTGGAC AAGACAAAAT AGATGTCAGA
AACCTGAATA TTAATGATTG GACTACCCTG CAATTACTCA TTAGTAATGA TGGTCAAGAC
AATGCCTTAA TTACTACCTT CTTCAATGGT TCTCAGTCGC GAATCAAACT ACTGAATATC
AACCCAAACC TACTCCAAGC TAGTGATTTC ATCTTCAACA CCGTTAACCT CAATCAAACT
ATCGAGGGTA CTAACTTCGC AGATCAGTTA TTCGGTGGTT TAGGTAATGA TACCCTCAGA
GGATTTAATG GTAATGATGT CTTATTTGGT GAACAGGGTG ATGACCGTTT TGAAGGTGGT
CGGGGTGATG ATACTTTCTA TAGTGGTGCT GGTAATGATG TCTTTAACTT GGAACAGCTA
CAAGACAATG ATGTAGTCAT AGATTTTGTA CGTGGACAAG ACAAGATTGA CCTCAGAAGC
CTCAATATTA GTGATTGGTC AACATTACAA ACACTCATTA GTAATGATGG TCAGAATAAT
GCCTTAATTA CTACCTTCTT CAATGGTTCT CAATCACAAA TCAAACTCAA TAACATTAAT
CCCAATCTAC TACAAGCTAG TGATTTCATC TTCAACACTA ATACTGTTAA CAACAATGAA
ACTATCGATG GTACTAACTT CGCAGATCAG TTATTCGGTG GTTTAGGTAA TGATACCCTC
AGAGGATTTA ATGGTAATGA TGTCTTATTT GGTGAACAAG GTGACGACCG TTTTGAAGGT
GGTGCTGGTA ATGACACATT CTATGGTGGC GCTGGTAATG ATATCGCCGT TTACTCAGGT
ACTCGTTCTC AATATCAAGT AACCAGTAGT GGAGGTGTTT TTACAGTTAC CGATACAGTG
GCTAATCGTG ATGGCGTAGA TACATTACGT GAAGTTGAAC AAATACAATT TTCAGATCAA
ACTATAACCA TTGGTAATAC CTCTCCAACT ATCACCCTAG CCGTATCTCC AGCTAGCGTT
ACCGAAGACG GAACCCCAAA TCTAATTTAC ACTTTCACCC GCACTGGCAG CACTACCAAC
GCCTTAACTG TTAACTATAG CGTTGCTGGG ACAGCTACCC TCAACACTGA CTATGCTCAA
AGTGGCGCTA CTAGTTTCAC TGCTACCACG GGTACCATTA CCTTTGCGGC GGGTGCAAGT
ACAGCCATCT TAACGATTAA TCCTACCGCA GATACCACCG TCGAAAGTAA CGAAACCGTT
GCTTTAACTT TAGCAACCGG CACAGGTTAT ACAGTCGGGA CAACAACAGC CGTCACTGGA
ACCATTACTA ATGATGATAC CTCACCTACT GGCATTACTA TCAATCTCAG TGGTAGTCAA
ACCATAGTCG AAGGTAGTAC CAGTCCTCAA AACGTTACAT ATACCGTTAC TCTTTCCCAA
GCCAGCAGTC AAATTATCAC CGTGCAATAT GCCACCGCTA ATGGTACAGC TACAGCAGGT
TCGGACTATA CAAGCACAAC AGGAACTCTG ACTTTCAACC CAGGGGAAAC CAGTAAAGTC
ATCAATATCC CCATTCTCAA TGATTCAGTT AATGAGGCAA ATGAAACCTT TACGCTGAGG
TTGACTTCTC CCACCAATGC TACTCTTGGG ACAACCAATA CTGTTACCAC AACTATCACC
GATACCCTCA GTGCTTCTGT GACTACCACT TTGCCAACCA ATGTGGAAAA CCTCACCCTC
ACAGGAACAG CAGCAATTAA CGGTACAGGT AATGCCGGAA ATAATGTCCT TACTGGTAAT
AGTGGCAATA ATATTCTTTC TGGTGGCGCT GGAAACGATA CTTATGCCTT TGTAGCTAAT
GCTGCCTTGG GAACGGACAC CATTACAGAA ACCGCTACAG GTGGTATTGA CACTATTGAC
TTCAGTGGTA GTACGGGTGC TGTCAGGGTG AATTTGGGTG TGACTACATC ACAAACGGTG
AATAGCAACC TCAAACTGAT TCTCTCTGCT AATAACGTCA TCGAAAATGC TACAGGTGGT
ACAGGTAATG ACAGGCTCAC TGGTAATGCT TTAAATAATA TTCTGGCTGG TGGTAACGGA
AACGACCAAC TGCAAGGATT AGCTGGAAAT GATACCCTCT GGGGTGGATT GGGGGATGAT
ATTCTGACTG GTGGCGCTGG TCAGGATAAA TATCTATTCC AAAGTAGTGG TGTTTTTAGT
TCCAGCTTAG GGGTTGATTA CATTAGCCAG TTTGATGTGG GACAAGACCA AATTGTGTTG
AGTAAAGCTA CATTTAATGC TGTTACTAAT AGCGCAGGAC AGGCTTTAAC TGATTTTGCC
GTTGTCAGTG ATGATGAATT TGTTAATGCT AGTAGTGCGC GGATTGTCTA TAGCCAAGGT
AGTGGTAGCT TATTCTACAA TCGAGACGGT AATGTTCTGG GTACAGGTAC AGTGTTTGAG
TTTGCTCGTT TAGGTAATCC TGATATTACT TTAAGTAGTA GCGATTTTAG TTTAATTGCC
TAG
|
|---|
| Protein sequence | MDPISGTNGN DNLSGTSGDD IIQGFNGNDT LSGLGGNDRL EGGRGDDTLT GGAGNDVFNF
EQLQDNDVVT DFVRGQDKID VRNLNINDWA TLQLLISNDG QDNALITTFS SGSQSRIKLL
NINPNLLQAS DFIFNTVNLN QTIEGTNFAD QLFGGLGNDT LRGFNGNDVL FGEQGDDRFE
GGRGDDTFYG GAGNDVFNLE QLQDNDVVID FVRGQDKIDV RNLNINDWAT LQLLISNDGQ
DNALITTFSS GSQSQIKLLN INPNLLQASD FIFNTVNLNQ TIDGTNFADQ LFGGLGNDTL
RGFNGNDVLF GEQGDDRFEG GRGDDTFYGG AGNDVFNLEQ LQDNDVVIDF VRGQDKIDVR
NLNINDWTTL QLLISNDGQD NALITTFFNG SQSRIKLLNI NPNLLQASDF IFNTVNLNQT
IEGTNFADQL FGGLGNDTLR GFNGNDVLFG EQGDDRFEGG RGDDTFYSGA GNDVFNLEQL
QDNDVVIDFV RGQDKIDLRS LNISDWSTLQ TLISNDGQNN ALITTFFNGS QSQIKLNNIN
PNLLQASDFI FNTNTVNNNE TIDGTNFADQ LFGGLGNDTL RGFNGNDVLF GEQGDDRFEG
GAGNDTFYGG AGNDIAVYSG TRSQYQVTSS GGVFTVTDTV ANRDGVDTLR EVEQIQFSDQ
TITIGNTSPT ITLAVSPASV TEDGTPNLIY TFTRTGSTTN ALTVNYSVAG TATLNTDYAQ
SGATSFTATT GTITFAAGAS TAILTINPTA DTTVESNETV ALTLATGTGY TVGTTTAVTG
TITNDDTSPT GITINLSGSQ TIVEGSTSPQ NVTYTVTLSQ ASSQIITVQY ATANGTATAG
SDYTSTTGTL TFNPGETSKV INIPILNDSV NEANETFTLR LTSPTNATLG TTNTVTTTIT
DTLSASVTTT LPTNVENLTL TGTAAINGTG NAGNNVLTGN SGNNILSGGA GNDTYAFVAN
AALGTDTITE TATGGIDTID FSGSTGAVRV NLGVTTSQTV NSNLKLILSA NNVIENATGG
TGNDRLTGNA LNNILAGGNG NDQLQGLAGN DTLWGGLGDD ILTGGAGQDK YLFQSSGVFS
SSLGVDYISQ FDVGQDQIVL SKATFNAVTN SAGQALTDFA VVSDDEFVNA SSARIVYSQG
SGSLFYNRDG NVLGTGTVFE FARLGNPDIT LSSSDFSLIA
|
|---|
| |