Gene Ava_3195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3195 
Symbol 
ID3680615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3970284 
End bp3972548 
Gene Length2265 bp 
Protein Length754 aa 
Translation table11 
GC content47% 
IMG OID637718545 
Productpeptidoglycan-binding LysM 
Protein accessionYP_323698 
Protein GI75909402 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.99045e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.82898e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGTTGAAAA ATACCCCTAC CAGCGATGAT GCCCCGGCAG ATCAGTTCAA CGTAGTAAAC 
AATCAAGCTA ATCGCCGGGC GCGCAGACAA GCGGCAATGA TTGGCCTAGC CATATCAATG
GGAGCAACCA GCCTTTTGGT GACTCGACAA AGCGATCAAG CCCAAGCGGC TGCGCCTGTG
GGTAGCCAAA AGGCAGCCTC AAGCATCCCT ACTGCTACTG ATTCCGAACT GAAATTAGCT
TCACAACTGC AAAATTCCAG AGTTCTATCG ACCAGCGTGC CGGAGAACCC AGTTATCATG
GAACCAACCG CAGTTTCACA GTTACCTGGA CTAGAAGCTA AGTGGCAAGT TTTGTCCAGT
GGAATGTCTG TGCAGGTTCC TGCATCAGAA AATATTACTA AAAACATCGC CTTTCATAAA
ACTACTATCA ACCACCAATC TCAACTGGCA CAAGGGGAAC AAACAACCAA GCCAGTAAAA
GAGATAGCAG CACAACTGAA CAACGTTAAC GGCGTGACTG CTGGGCAAAA TATATTACCA
ACGACTCAAC CACAAGCACT AGCTGATAAC ACAACCGCTA GTGACGGTAT TAATGCCCAA
CTAAAAGCGC AGCAAGAATT TGCGCTCAGT CGTTTACAAG AGAAATCGAG CCGTTTAAGA
AAAAGTCTGG CGGAGTTGCG GTCTGAGGAG TCAAAAGATT TATCAAAAAC GACTGTTGGG
TTAACACAGC CCACAAGTTT AGCTAATCAA CTACCACCAT TGACCACAAA TGGTACAGTA
ATTGAGCAGC AGTTAACAGT GGCTAATGGT AGCCAAGATA GCCTAGCAAC TACCATCAAG
CAGCCACAGC CGATTAACAT ACCAGTACAG CCATTAACTG AAACCTCAGC ATCAACTGCA
AATACTTACG AAGTTAAGCC CGGAGATACC CTAGCGGCGA TCGCCAGCAG ATACAATACT
TCGGTTGCAG AATTGGTAAA AGTTAATAAT CTTAGCAATC CTAACCAATT AAAAATTAGC
CAACAACTAA TTATTCCTGG TAGAGCAAAC AACATCATAG CTCAAGCACC AGCAATAATT
AGCTCTAACA GTGTGCAGTA CCCCAGCACG CCTACAGTAC CTAACTTCCC TGTAGATACT
GCTAGAGTCA ATCCTAGCTT GCCAGTTGTA CAGCCCCCAG CTATAGCTAA CAACGACAGT
GTGCCTATTG CTGTGCCAAC ACCAGGTGCT AATAGTGAAA CACCAGTTGA TACAATTGTT
CCCCTAGAAT CAGCTTCAGC GCCTGCTGAT ACCCAAGGGG TGGGTGGTAA TGTACCAATA
CCCAAAGCCT TTATCGAAAT ACAGCGCCCT CAACAACCTG GAAAGAGAGT AGCCAGAGCA
AAAGGCGATC GCTTGCGTAG CTTACAAGCA GAAATCCAAA GATTACAGGC AAAATATCGG
GATCAACAGA CTGGTAATAC ATCTGCACCA GTAGTTGCCA ATCAAAACAA TGGCATTGCT
ATACCAATTC CCGTTACTAG CCCCAACAAT TTTGCAGTAA CTAGACCAAT TTCCAGACAG
CAAGAAATCG CCGTACCAAT TGCTGTACCC ACACCATTAG CACCAAACTA CAGCGACCAA
CCCGTTAAGC CTCAATTCCG GGCTACGCTC CCCGTAAATG AGCCATTAAA TCCGGAATTC
CTGCCTAATA ACGCCCCTCG GAATCCTTCC ATCAGAAGGG TAGCTACACC TCCTGCCCGT
CTCAATGCTT CTGAGTCGCT GGGAAGAATG CGAGGAACTA CTGTGTCTCC AAACTTGCCA
CCTTTGGCAG CAGTAGACCA GTACTTACCA CAAGCAATCG ATGAAAACGT TCCTCCCCCA
TCAGACTCCT CCGTAGCACT GATTTGGCCA ACAAAAGGTG TACTAACCTC TGGCTACGGT
TGGCGCTGGG GCAGAATGCA CAGAGGTATT GATATCGCTA ACGCTGTTGG CACACCAGTT
TTCGCCGCAG CCGATGGCGT TGTGGAGAAA TCTGGTTGGA ATAAAGGCGG TTACGGTAAT
CTTGTGGATA TTCGTCACCC CGATGGCAGC TTGACCCGTT ACGCTCACAA CAGCAGGCTT
TTAGTCCAAG CAGGTCAGCA AGTGCGTCAA GGGCAGCAAA TTGCCGCTAT GGGTAGCACC
GGCTTTAGCA CAGGCCCCCA CACTCACTTT GAAATCCATA AATCTGGCAA AGGAGCAATA
AATCCTATAG CGATGCTACC AGCCACAACC AGTAACCGCA TATAG
 
Protein sequence
MLKNTPTSDD APADQFNVVN NQANRRARRQ AAMIGLAISM GATSLLVTRQ SDQAQAAAPV 
GSQKAASSIP TATDSELKLA SQLQNSRVLS TSVPENPVIM EPTAVSQLPG LEAKWQVLSS
GMSVQVPASE NITKNIAFHK TTINHQSQLA QGEQTTKPVK EIAAQLNNVN GVTAGQNILP
TTQPQALADN TTASDGINAQ LKAQQEFALS RLQEKSSRLR KSLAELRSEE SKDLSKTTVG
LTQPTSLANQ LPPLTTNGTV IEQQLTVANG SQDSLATTIK QPQPINIPVQ PLTETSASTA
NTYEVKPGDT LAAIASRYNT SVAELVKVNN LSNPNQLKIS QQLIIPGRAN NIIAQAPAII
SSNSVQYPST PTVPNFPVDT ARVNPSLPVV QPPAIANNDS VPIAVPTPGA NSETPVDTIV
PLESASAPAD TQGVGGNVPI PKAFIEIQRP QQPGKRVARA KGDRLRSLQA EIQRLQAKYR
DQQTGNTSAP VVANQNNGIA IPIPVTSPNN FAVTRPISRQ QEIAVPIAVP TPLAPNYSDQ
PVKPQFRATL PVNEPLNPEF LPNNAPRNPS IRRVATPPAR LNASESLGRM RGTTVSPNLP
PLAAVDQYLP QAIDENVPPP SDSSVALIWP TKGVLTSGYG WRWGRMHRGI DIANAVGTPV
FAAADGVVEK SGWNKGGYGN LVDIRHPDGS LTRYAHNSRL LVQAGQQVRQ GQQIAAMGST
GFSTGPHTHF EIHKSGKGAI NPIAMLPATT SNRI